Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00232 ATGACTTTGTTATCTTTCTGTTCAATTTGGTGCATGGCCTTAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCACCAGCTGTTGCGGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCGGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAGCTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTTGGTAGGGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATGATCAGTATGGCTGTGCATCGTAATCTGCTCCGCCTACGTGGCTTTTGTATGACACCCACTGAACGGTTGCTGGTCTACCCATATATGGTTAATGGAAGTGTAGCATCATGTTTACGAGAACGTGGAGATTCACAGCCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGATCGGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATCATTCATCGCGATGTGAAAGCTGCAAATATTTTGCTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGAGGAACAATTGGGCATATAGCGCCCGAGTACCTTTCGACAGGAAAATCTTCCGAAAAGACCGATGTTTTTGGGTATGGGGTCATGCTTCTTGAACTCATAACTGGACAGAGAGCCTTCGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCATTGTTGTGCACACAAGGAACTCCTACAGAGCGGCCTAAGATGTCAGAGGTCGTACGGATGCTCGAGGGCGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACGTAAGCCGCAATCCCCACCCGAGTGCAACGTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCTGGTCCAAGATGA 1224 46.81 MTLLSFCSIWCMALGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMVNGSVASCLRERGDSQPPLNWLNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDVSRNPHPSATWILDSTAEIPPDELSGPR 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1299400 1301373 - Carg16805-RA Car16g00232 163384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00232 407 ProSiteProfiles Protein kinase domain profile. 84 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00232 407 Pfam Protein kinase domain 85 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00232 407 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Car16g00232 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Car16g00232 407 MobiDBLite consensus disorder prediction 376 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01089 Car-Chr9:10183414 Car16g00232 Car-Chr16:1299400 0 dispersed
Car16g00232 Car-Chr16:1299400 Car05g00023 Car-Chr5:126905 1.18E-167 dispersed
Car16g00232 Car-Chr16:1299400 Car04g00361 Car-Chr4:2040497 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89428 PF00069 Pkinase 5.10E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00232 K13416 - csv:101216389 753.436