Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00235 ATGGGTACCGATGATATTTTAGCATCACATATATTGTTTCATTTGGCTGACATTTCAACTTCTCATATGGCAGTGCAGTCGAGAATGATGAAGCTGCAAACATATGCAGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGCCAGTTCTACCCAGCACTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTCTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAGAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAGGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATAACTATTTTCCGCCAAGATTTTTCTGTTTCATTCCTTGGTATGGTTACGGCTCTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACTACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCCTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAGGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCAACAACGGCTGTGTCAACGTTTGTAAAATATATTTTCTATGTCAGTGATGTACTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAACTTATCCGAGACTTACTTCACTTGTCAATGTACCTGTGTTTCTTTCTTGTGATTTTCATGACCTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAATGATCGCTTTCCTGATGCAACGCCTGAAGAACTCAATTCAAGTGACGCAACATGCATTATCTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGATCCTGGTTGGAGCGACAACATACTTGCCCAACCTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCACAGCAGCCGGTCATCATGGACCACAATCTGATGCTAACCAA 1146 41.19 MGTDDILASHILFHLADISTSHMAVQSRMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVSFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAAGHHGPQSDANQ 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1495880 1497712 - Carg19739-RA Car16g00235 163387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00235 382 Pfam Ring finger domain 319 358 IPR001841 -
Car16g00235 382 ProSiteProfiles Zinc finger RING-type profile. 320 358 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00795 Car-Chr2:5793634 Car16g00235 Car-Chr16:1495880 4.25E-16 dispersed
Car07g01160 Car-Chr7:7000942 Car16g00235 Car-Chr16:1495880 1.15E-10 dispersed
Car16g00235 Car-Chr16:1495880 Car02g00670 Car-Chr2:5007246 1.13E-08 dispersed
Car16g00235 Car-Chr16:1495880 Car04g00360 Car-Chr4:2034936 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00235 K10601 - csv:101215351 699.123