Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00251 ATGGGAAGAGGGAAGATAGTGATAAGAAGAATAGACAATTCAACGAGCAGACAAGTGACGTTTTCTAAGAGAAGAAGTGGGTTACTGAAGAAGGCTCGAGAGCTTTCGATTCTTTGTGATGCTGAGGTTGGATTGATCATTTTTTCAAGCACTGGGAAGCTCTATGACTATTCCAGCTCCAGCATAAGGTCAATTACTGATCGCTACAACAAGATGAAAGAGGAGCAAAATCAGTTGATGAACCCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGGTTTGAAGCAACAGCTGCATTACATGCAAGAATGTCACAGACAATTAATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAGATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGCGAGGAAATTACTCAACTAAGACAGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCACAGTTCATCAATTCACTTTCGCCAATAGATACGCTATGCCTGCTCCCGTCCATCTACAGCTAAGACAGCCACAACCACAAAACAACGAAACATCAGTACCAGGGATAAAGCTGGGACCAGACTCTGAAGTTGTGATGCCAATTAGCTGA 654 42.51 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKEEQNQLMNPVSELQFWKREAAGLKQQLHYMQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSEEITQLRQKVYGPMEVDKTSSSTVHQFTFANRYAMPAPVHLQLRQPQPQNNETSVPGIKLGPDSEVVMPIS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1590857 1600105 + Carg19722-RA Car16g00251 163403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00251 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car16g00251 217 Pfam K-box region 84 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car16g00251 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car16g00251 217 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car16g00251 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01240 Car-Chr4:7144068 Car16g00251 Car-Chr16:1590857 6.05E-80 dispersed
Car09g00532 Car-Chr9:2996348 Car16g00251 Car-Chr16:1590857 6.00E-62 dispersed
Car13g00458 Car-Chr13:6936586 Car16g00251 Car-Chr16:1590857 1.91E-44 dispersed
Car16g00251 Car-Chr16:1590857 Car18g00016 Car-Chr18:72368 3.05E-45 dispersed
Car16g00245 Car-Chr16:1561553 Car16g00251 Car-Chr16:1590857 3.65E-25 proximal
Car01g00216 Car-Chr1:1170227 Car16g00251 Car-Chr16:1590857 1.11E-41 transposed
Car16g00251 Car-Chr16:1590857 Car03g00779 Car-Chr3:6495384 3.76E-69 wgd
Car16g00251 Car-Chr16:1590857 Car04g00386 Car-Chr4:2188168 3.27E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4910 PF01486 K-box 7.90E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00251 K09264 - csv:101203098 340.502