Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00255 ATGGCCACCGGTGCGCTGCTCCGTTCTCTTCGACGTCGCGATTTAGCATCCTCCTCCCTTGCAGCTTACCGATCATTAACAAGCAATGCCAAGCCGTCATGGGGAAACTCTCACCTTAGCCAATCATGGGCTACTTTGTCCAGGCCATTCAGTTCAAAGCCTGCTGGGAATGATGTAATTGGTATTGACTTGGGTACCACCAATTCTTGTGTTTCTGTCATGGAAGGGAAGAATCCAAAAGTTATTGAAAATTCAGAAGGTGCAAGAACCACACCGTCCGTGGTTGCTTTCAATCAGAAGGGCGAACTACTTGTAGGAACACCAGCAAAGAGACAGGCAGTGACAAATCCAACTAACACTGTGTTTGGAACCAAACGTCTGATTGGTAGACGCTTTGATGATCCTCAGACACAGAAGGAAATGAAGATGGTGCCATATAAAATAGTCAGAGCTCCAAATGGAGATGCTTGGGTTGAAGCAAACGGACAGCAGTACTCACCGAGTCAGATTGGTGCTTTTGTTCTAACAAAGATGAAGGAAACTGCTGAGGCCTACCTTGGTAAGAGCGTGTCTAAGGCTGTGATCACTGTTCCAGCTTATTTCAACGATGCACAGAGACAGGCAACAAAGGATGCTGGCAGGATTGCTGGTTTGGATGTTCTTAGAATTATCAACGAGCCCACTGCTGCTGCACTTTCTTATGGAATGAACAATAAGGAGGGTCTAATTGCTGTTTTTGATCTTGGTGGTGGCACATTCGATGTTTCCATCTTGGAGATATCCAATGGTGTTTTTGAGGTGAAATCAACAAATGGTGACACATTCTTAGGTGGAGAGGATTTTGACAATGCTCTTTTGGACTTCCTAGTGAGCGAGTTCAAACGAACTGAGGGAATTGACCTTACCAAGGACAAGCTTGCCTTGCAGAGGCTTAGAGAAGCTGCAGAAAAGGCAAAGATTGAACTATCATCTACATCACAGACTGAGATTAACCTGCCATTTATCACTGCTGATGCATCTGGTGCAAAGCATTTGAACATCACTTTGACCAGGTCGAAGTTTGAAAGCCTTGTTAATCACTTGATTGAAAGGACCAAGGCCCCATGTAAAAATTGTTTAAAGGATGCCAGTATTTCTATCAAAGATGTCGATGAAGTTCTTTTAGTTGGTGGAATGACTCGTGTACCAAAGGTGCAAGAGGTTGTCACAGAAATTTTTGGAAAGAGCCCCAGCAAAGGAGTGAACCCTGATGAAGCAGTTGCTATGGGAGCTGCAATTCAGGGTGGCATTCTTCGTGGTGATGTCAAAGAATTGCTTCTATTGGATGTTACCCCTCTATCGCTCGGTATTGAGACACTTGGGGGGATCTTTACACGGTTGATCAGTCGGAACACTACCATTCCAACTAAGAAGAGCCAGGTGTTCTCAACCGCAGCTGACAATCAGACCCAGGTGGGTATCAAGGTATTGCAAGGTGAGAGGGAAATGGCCTCTGACAACAAGCTTCTAGGCGAGTTCGAGTTAGTTGGAATTCCTCCTGCCCCAAGAGGACTGCCTCAAATTGAAGTGACATTCGACATCGATGCCAATGGTATTGTTACCGTCTCTGCAAAGGACAAGTCCACCGGTAAAGAGCAACAAATCACCATTCGATCTTCTGGAGGACTCTCAGAAGATGAAATTGAGAAAATGGTGAAAGAAGCAGAGTTGCATGCCCAGAAGGATCAAGAGAGAAAGGCTCTTATTGACATCAGAAACAGTGCAGATACTACCATATACAGCATCGAGAAGAGCTTGGGTGAATATAGGGAGAAAATACCAAGTGAGGTTGCCAAAGAAATCGAGGATGCGGTGGCAGAGTTGAGGAAGGCAATGTCAGAAGACAACATTGAAGAGATTAAGTCGAAACTTGATGCCGCCAACAAGGCTGTTTCCAAGATTGGGCAACACATGGCTGGTGGTTCCGGTGGTGGCTCCGCTTCTGGAGGATCTCAGGGTGGCGAACAAGCCCCCGAAGCCGAGTACGAAGAGGGCCATAGCGAGGTTGAATCCGACCTCTATCTGGAGATTTTACAGCCCTGTTGTTGTATCAAAGACCCCTCCTTGTTGCCATTCATCAAGTCTTCACCGCTTCATTGTGCATTGTCGTCAGAATCGCTTCCGGATGAACTACCGTCGGAATCAGAATCTGCAAGGATGGTACCCCGTTAA 2211 46.09 MATGALLRSLRRRDLASSSLAAYRSLTSNAKPSWGNSHLSQSWATLSRPFSSKPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKSTNGDTFLGGEDFDNALLDFLVSEFKRTEGIDLTKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNHLIERTKAPCKNCLKDASISIKDVDEVLLVGGMTRVPKVQEVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVAELRKAMSEDNIEEIKSKLDAANKAVSKIGQHMAGGSGGGSASGGSQGGEQAPEAEYEEGHSEVESDLYLEILQPCCCIKDPSLLPFIKSSPLHCALSSESLPDELPSESESARMVPR 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1619869 1624468 + Carg19716-RA Car16g00255 163407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00255 736 ProSitePatterns Heat shock hsp70 proteins family signature 1. 62 69 IPR018181 -
Car16g00255 736 Coils Coil 611 643 - -
Car16g00255 736 Hamap Chaperone protein DnaK [dnaK]. 56 678 IPR012725 GO:0005524|GO:0006457|GO:0051082
Car16g00255 736 ProSitePatterns Heat shock hsp70 proteins family signature 3. 386 400 IPR018181 -
Car16g00255 736 MobiDBLite consensus disorder prediction 648 681 - -
Car16g00255 736 Pfam Hsp70 protein 59 651 IPR013126 GO:0005524|GO:0140662
Car16g00255 736 Coils Coil 301 328 - -
Car16g00255 736 MobiDBLite consensus disorder prediction 717 736 - -
Car16g00255 736 ProSitePatterns Heat shock hsp70 proteins family signature 2. 245 258 IPR018181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00419 Car-Chr10:2107543 Car16g00255 Car-Chr16:1619869 0 dispersed
Car14g01537 Car-Chr14:12685666 Car16g00255 Car-Chr16:1619869 9.28E-65 dispersed
Car16g00255 Car-Chr16:1619869 Car16g00544 Car-Chr16:3446538 7.53E-69 dispersed
Car17g00755 Car-Chr17:6707741 Car16g00255 Car-Chr16:1619869 1.67E-61 dispersed
Car04g01975 Car-Chr4:14210970 Car16g00255 Car-Chr16:1619869 0 transposed
Car09g01005 Car-Chr9:6677699 Car16g00255 Car-Chr16:1619869 0 transposed
Car15g01312 Car-Chr15:10220266 Car16g00255 Car-Chr16:1619869 0 transposed
Car16g00255 Car-Chr16:1619869 Car04g00389 Car-Chr4:2207151 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00255 K04043 - csv:101216102 1228.39