Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00289 ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCACTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTCTTCTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCATTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAAGATGTTCGGAATGGCGATCGATTGGACGATAGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCACGGTGGAAGAAGCTACGAAGGACGATAAAGTTGCACCGACACCAGTTGACACCAACTCGAGGAAACGATCCCCGAGTTCGTATAATTCAATGTGGGACTCCCTCTCAACGATCCTCAACACTAATGACATTGCGCTTTGTGATTTGATAATGAAGGTGGAAAAGACGAAGATGAGTACGAGGAACACGAGGGCACGGAAGAGCTCGAAGATTGCTTCGGGTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGGAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCGAACGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATGCATCACAATAG 1023 46.14 MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMDEPSYYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQFPAGSSQPEKRAEITVEEATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1789643 1791068 - Carg19683-RA Car16g00289 163441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00289 340 MobiDBLite consensus disorder prediction 235 256 - -
Car16g00289 340 MobiDBLite consensus disorder prediction 131 150 - -
Car16g00289 340 Pfam Helix-loop-helix DNA-binding domain 262 302 IPR011598 GO:0046983
Car16g00289 340 MobiDBLite consensus disorder prediction 100 163 - -
Car16g00289 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Car16g00289 340 MobiDBLite consensus disorder prediction 235 259 - -
Car16g00289 340 MobiDBLite consensus disorder prediction 194 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00539 Car-Chr12:3584220 Car16g00289 Car-Chr16:1789643 1.63E-20 dispersed
Car16g00289 Car-Chr16:1789643 Car10g00442 Car-Chr10:2224460 2.71E-20 dispersed
Car11g01142 Car-Chr11:9163980 Car16g00289 Car-Chr16:1789643 6.05E-56 wgd
Car16g00289 Car-Chr16:1789643 Car19g00413 Car-Chr19:5990413 9.99E-17 wgd
Car16g00289 Car-Chr16:1789643 Car04g00421 Car-Chr4:2404628 1.46E-108 wgd
Car16g00289 Car-Chr16:1789643 Car05g00125 Car-Chr5:639016 1.94E-52 wgd
Car16g00289 Car-Chr16:1789643 Car09g00239 Car-Chr9:1316589 1.32E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4912 PF00010 HLH 3.60E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00289 - - cpep:111810674 577.785