Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00307 ATGATGCAAGATCTGTTGCAGAACAGGAATCCATGGAACTTCTTCGATGCCACTAACAAGGCTCTGTTTTGGAGCTTCACTTTCTTTCTCCCTCTCCTTCATTTTCCCTCTTTTGCTCTCAACAGCGATGGCGCCCTCTTGTTGTCTCTCAAACGCTCCATTCTCGGCGATCCCTTGTCCGTTTTCGCTAATTGGAATGTTTATGATGCCACACCCTGTTCCTGGCGTGGAGTCACCTGCACCGACCTCCGTGGCTATGGCGGCGGATGGCCGGATTTGCTCAGAGTCACTGCCGTCTCACTCTCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTGGGAAGGATCGAACACCTTCGTCTTCTTGATCTTTCCGGTAATTTCTTTAATGGGTCTCTCCCGGTTTCCATTTTCAATGCTTCGGAGCTTCAGATTCTTTCTCTTTCGAACAATGTAATCTCCGGGGAGTTGCCGGCGGATATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTGTCTGATAATGCGTTGGCCGGGAAAGTGCCCGGAAATCTCACTGCTCTGAAGAATCTCACCGTCGTTTCTCTGAGGAGTAATTATTTCGTCGGAGAGATTCCTGGGAATTTCAGTTGGGTTGAGGTTTTGGATTTGTCTTCTAATTTGCTCAATGGGTCTTTGCCGGCGGATTTCGGTGGGGAAAAACTACGGTCTTTGAACTTCTCTTACAATAAAATTTCAGGTCCCGTTCCACCGGAGTTCGCGAAGTGGATTCCGGCGAATGCGACGATGGATCTCTCTTTCAACAATCTCACCGGAGCGATTCCTCAGTCGGCTGCTCTGCTCAGCCAGAAAACAGAGGCGTTCGCCGGAAATGAGGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCGATTCATTCCTCACTAACAATTCCCCCAAATGTTTCTGAAATTTCATCTTCTTCTCCGGCAATCGCCGCCATACCAAAAACAATCGGCTCTATTCCAGCAACAAAGTCCCCCGGAGGTCCAAACGGGACGCAAACTTCTCAGCCGCAAAACACCATGAAACCCATCACAATAGCCGCAATCGCGGTCGGAGACCTTGCCGGAATCACCATTCTGGCCATCGGGATTCTCTACGTCTACCATCACCGGAAACAAACAAGTCCCAATTCCAAAACCTCTAAATCCGCCGAGAAGAAGCCGCCGATTGGCTCAGACCAAGACCGCCATAACACCCAAAAAAAACCTTCATCGGTGTTGTTCTGTTTGGCCAACAAAGGAGAAGATACATCGGAGGCGACAAGTTCTTCCGACGGCGAAGAACAGAGGGAGCAATCCGGAGCAAACTACGGCGGAGTGAACAGAGACAGTAAGAAAAACGGCGTGCTGGTGACATTGGACGGAGAAACGGAGATGGAATTGGAGACATTGTTAAAGGCGTCAGCATATATACTTGGAGCAAGTGGCGGAAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACGGCGTTCGCCGTCAGAAGGATCGGCGACGTCAACTTTGAGAGATTGAGGGATTTCGAGGCGCAAATGAGAGCCATTGCTAAGCTTCGACATCAAAATTTGGTGAAAATTCGCGGGTTCTTTTGGGGAGAAGATGAAAAGCTCATAATCTATGATTACGTCTCCAATGGCTGCCTTGCAACCTCCATTCACAAAAAACAGAGTTCATCGTCTTCTTCCCAGATCCATCTATCATTTGAAGTCCGACTGAAAATCGCCAGAGCAAGAATAAAAAAGACAGAATAA 1797 48.97 MMQDLLQNRNPWNFFDATNKALFWSFTFFLPLLHFPSFALNSDGALLLSLKRSILGDPLSVFANWNVYDATPCSWRGVTCTDLRGYGGGWPDLLRVTAVSLSGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPVSIFNASELQILSLSNNVISGELPADIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFVGEIPGNFSWVEVLDLSSNLLNGSLPADFGGEKLRSLNFSYNKISGPVPPEFAKWIPANATMDLSFNNLTGAIPQSAALLSQKTEAFAGNEDLCGKPLKHLCSIHSSLTIPPNVSEISSSSPAIAAIPKTIGSIPATKSPGGPNGTQTSQPQNTMKPITIAAIAVGDLAGITILAIGILYVYHHRKQTSPNSKTSKSAEKKPPIGSDQDRHNTQKKPSSVLFCLANKGEDTSEATSSSDGEEQREQSGANYGGVNRDSKKNGVLVTLDGETEMELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVNFERLRDFEAQMRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLATSIHKKQSSSSSSQIHLSFEVRLKIARARIKKTE 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1884400 1886314 + Carg19665-RA Car16g00307 163459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00307 598 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Car16g00307 598 MobiDBLite consensus disorder prediction 334 354 - -
Car16g00307 598 ProSiteProfiles Protein kinase domain profile. 482 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00307 598 MobiDBLite consensus disorder prediction 389 419 - -
Car16g00307 598 MobiDBLite consensus disorder prediction 339 354 - -
Car16g00307 598 MobiDBLite consensus disorder prediction 432 457 - -
Car16g00307 598 MobiDBLite consensus disorder prediction 402 416 - -
Car16g00307 598 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Car16g00307 598 Pfam Protein tyrosine and serine/threonine kinase 503 583 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00307 Car-Chr16:1884400 Car20g00831 Car-Chr20:5532013 4.78E-160 dispersed
Car16g00307 Car-Chr16:1884400 Car04g00445 Car-Chr4:2515623 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89429 PF07714 PK_Tyr_Ser-Thr 2.60E-06 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00307 - - cmax:111478916 901.738