Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00315 ATGGCGGCTCAGGTGCAATCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTCAACGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTGGTCTCGGTTCGCGTTTGCCGAGACTTGACGACCCGACGATCTCTTGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAATTTTACCCCTCTTAATGGAAAGCCTATAAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCAGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTGCATGATACGTTTTCTGCATTTGGTAGTATCCTGTCCTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGGTCAGAAAGCAATTGAGAAGCTGAACGGCATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAGCAAGAAAGAGACGGTGTTGTTGACAAGTCGAAATTTAACAACGTTTTTGTAAAGAATTTTTCTGAGACAACTTCTGAAGAAGAATTGAATGATGTTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAGTGCCGATGATGCTGCTAGAGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGAACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTATACATCAAAAATTTGGATGATAGCATTGTTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACAATCACATCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGATCTGGATTTGTTGCATTCTCAACACCCGAAGAGGCTTCTAGGGCTCTTATGGAGATGAATGGAAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCACAACGGAAGGAAGATAGAAGAGCCAGATTGCAGGTA 1194 42.29 MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQV 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1929225 1932257 + Carg19657-RA Car16g00315 163467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00315 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Car16g00315 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Car16g00315 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Car16g00315 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Car16g00315 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Car16g00315 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Car16g00315 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Car16g00315 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00315 Car-Chr16:1929225 Car14g00231 Car-Chr14:1082388 6.21E-22 dispersed
Car11g01101 Car-Chr11:8668681 Car16g00315 Car-Chr16:1929225 4.71E-42 wgd
Car16g00315 Car-Chr16:1929225 Car19g00450 Car-Chr19:6228990 7.64E-46 wgd
Car16g00315 Car-Chr16:1929225 Car04g00450 Car-Chr4:2548265 3.32E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00315 K13126 - csv:101219802 753.821