Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00317 ATGGCGGCGGCCACCGCACTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTATTTCTTCAGCTGCAGCTTCCTGAAACAATGGCGGATTGTCCCTTGGATTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTGGCTCAGCTTGCAAATTCAACTGGTGAACTAGGAGTTTCTTCAAACTTAACCAACATTTGCCTGCAATCTATATCTCAAACCATGGAACTATATGGAGTTCCTAGAAATGCCATGGTTTTCTGTGGGGTTGGAACGAAAATTCCAGTAAACTACGCGTGTAGAGGCCGAGAAACCGTCACGCAGATGCTGGAATCTCCGAAGTTCACGAAAGTTGGGGAGAATTGCAGAGTGCTGCTATCAGAGGAGAGTGCTTGTAGGAAGTGTATCAATGCTGGGATTTTATATCTCCGCAATCTTATTGGGAGAGAAGATAATATAACATTGAATACCTGTCGTGATGCTACGTTTGTTGCTCTTGCTAGCCAACTTGATGCTGCTTCAGTGATTGATCTTGCAAGCTGCTTCTTTGGAGTTCAAGGTCTTAACAGGCCTCCAGCTCCACCTCCATCTTCGGCTACCCCGGATATTTCCCCAAGTCCATCAGCTGCTGCAAGTCCCGGGCCACTGGCGCTAGGCGTTTCTGATGGTAAACGTCATCGACATCATTCCTACCATGTAACATTAGTGGCAGGTATTGGCATTGCAGTGACTGTAGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATCCGAAGGAAAAGCAGAGAGCTAAAGGATTCCGAGAAGACGGATGCGAACTCTTCAAGATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCCATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGACAAGGAGGATATGGGACTGTTTATAAAGCTCAATTCAGTGAAGACTTAGTGCTAGCTGTGAAGAGGATGAACAAAGTCTCTGAGCAGGGGGAGGATGAATTTGGCAGAGAAATCGAGCTGCTTGCGAGATTACATCACCGACATCTCGTTGCTTTAAGAGGCTTTTGTGTCGAGAAGCATGAACGGTTTCTTTTGTATGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCAGACAAGAATCCAAATCGCCATCGATGTCGCTAATGCTCTGGAGTACCTTCACTACTATTGTGATCCTCCACTGTGTCATAGAGACATCAAGTCCAGCAACATTTTGCTGGATGAGAACTTTGTTGCTAAGGTTGCCGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCGGTTTTCTTTGAACCCGTTAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCTGAGTACGTTATCACGCAAGAGCTTACCGAGAAAAGTGATATATACAGCTACGGCGTGCTACTTCTGGAAATAGTTACAGGCAGACGGGCGATACAAGACGGGAAGAACTTGGTTGAATGGTCCCTGGCGTACATGATTTCAGATTCGAGGATATCCGAACTAGTAGATTCAAGTATCAAGAGTTCTTTTAATTTGGACCAACTTCACACAGTGGTGTCAATTGTGAGATGGTGCACTGAGGGAGAAGGCAGGGCGAGGCCCTCGATTAAACAGGTGCTTCGACTATTGTACGAGAGTTCGGACCCGATGCATCAAGGGCTCATAGAAGCTGTTGACGATGAAGAATATGGAGGCAATGAAGGGAGGCAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGTGATTTTTCAGTGTGGAGATGGAAGGTACCTTGCTTCTTCATCAAGCACATCTAGATCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCCCCACAGTCTCCTCCCAATATTTTGTCTGTCTCAGACCAATTATTTTAG 2046 45.06 MAAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANSTGELGVSSNLTNICLQSISQTMELYGVPRNAMVFCGVGTKIPVNYACRGRETVTQMLESPKFTKVGENCRVLLSEESACRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDAASVIDLASCFFGVQGLNRPPAPPPSSATPDISPSPSAAASPGPLALGVSDGKRHRHHSYHVTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSEKTDANSSRSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSEDLVLAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVEKHERFLLYEYMANGSLKDHLHAPGRTPLSWQTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLAYMISDSRISELVDSSIKSSFNLDQLHTVVSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLIEAVDDEEYGGNEGRQSMSKRKMHKSDVIFQCGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNILSVSDQLF 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1950537 1955276 + Carg11284-RA Car16g00317 163469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00317 681 Pfam Protein kinase domain 332 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00317 681 ProSiteProfiles Protein kinase domain profile. 328 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00317 681 Pfam SPARK 29 161 IPR043891 -
Car16g00317 681 MobiDBLite consensus disorder prediction 213 243 - -
Car16g00317 681 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Car16g00317 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00317 Car-Chr16:1950537 Car03g01314 Car-Chr3:10021723 7.00E-76 dispersed
Car16g00317 Car-Chr16:1950537 Car04g00456 Car-Chr4:2587998 2.37E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89431 PF00069 Pkinase 6.30E-49 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00317 - - csv:101219079 1161.75