Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00326 ATGTCGTTTCGAAGCATTGTTCGTGATGTTAGGGATAGCATTGGGAGCTTATCTAGACGAGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGGAAGTCGAATGTGTCGTCGTTAAATGATGTTCATGATCAGTCTCCTGTTGTTCAGAATGGCTGCTGGGCTAATCTTCCACCCGAGCTGTTGTATGATGTCGTTCGAAGACTTGAAGAGAGTGAATGTACATGGCCTTCACGAAAGAACGTCGTGGCCTGCGCTGCGGTGTGTCGTTCTTGGAGAATTATGTGTATGGAGATCGTTAAAGGCCCGGAAGTTTGTGGGAAGCTTACGTTTCCTGTGTCACTGAAGCAGCCCGGACCGCGCGATGGATCCGTACAATGCTTCATTAAGAGGGACAAATCGAACCTAAGATACCATCTCTACTTGTGTCTTAGCCCTGCTCTTCTGGTTGAAAACGGGAAGTTTCTTCTCTCTGCTAAGCGTACACGAAGAACGACTAGCACGGAGTATATCATCTCAATGGATGCAGAAAACATTTCGAGATCGAGTAGCTCGTACATCGGAAAGCTGAGGTCAAATTTTCTTGGAACGAAATTCATCGTCTATGATACTCAACCTCCGTACACCGCTGCCCCGCTCCCTCTTCCGGGGAAAACTAGCCGTAGATTCTATTCGAAAAAAGTGTCGCCGAAAGTCCCGACTGGGAGTTACAACATAGCTCATATAAGTTATGAACTTAATGTCTTAGGAACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCGATACCAGTGTCTTCCCTCGATGCAGGGGGTGTTGTTCCAGGCCAACCTGAGCTCCTCCCTCCGAACTCTCTCGACGATTCATTTCGGAGTGCGTCATTCTCAAAAGCCTTGGATCATTCCATGGAGTTTAGTAGTGCTAGATTCTCCGAAATTGGGCGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTACTAAAAAACAAGCCGCCGAGATGGCACGAGCAGCTACAATGTTGGTGCCTGAACTTTCGTGGGCGGGTAACGGTTGCGTCGGTTAAGAATTTTCAGTTGATTGCAGCAATACAACCAGGGGCTGGCGCTCCAACCCCGTCTCAACCAGGGCCACCGGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGGAAAGACATGTTCACGATGGATTATCGATATCCGCTGTCTGCTTTTCAGGCTTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 48.25 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNVSSLNDVHDQSPVVQNGCWANLPPELLYDVVRRLEESECTWPSRKNVVACAAVCRSWRIMCMEIVKGPEVCGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLRYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPLPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGVVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPGAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2007663 2009950 - Carg11293-RA Car16g00326 163478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00326 428 Pfam Tub family 115 423 IPR000007 -
Car16g00326 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Car16g00326 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Car16g00326 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02358 Car-Chr4:18952185 Car16g00326 Car-Chr16:2007663 0 dispersed
Car06g01262 Car-Chr6:9073124 Car16g00326 Car-Chr16:2007663 1.41E-148 dispersed
Car14g01476 Car-Chr14:12260396 Car16g00326 Car-Chr16:2007663 3.83E-150 dispersed
Car15g00552 Car-Chr15:3044590 Car16g00326 Car-Chr16:2007663 0 dispersed
Car16g00326 Car-Chr16:2007663 Car16g00653 Car-Chr16:4150748 2.32E-160 dispersed
Car16g00326 Car-Chr16:2007663 Car04g00473 Car-Chr4:2678728 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4917 PF01167 Tub 6.10E-116 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00326 K19600 - csv:101216314 853.973