Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00329 ATGGAGATTGATCTCTCACTCAAAATTGATCAAGAACAAGAACACGAACACGAACACGAACAAGATCAAGAACAAGTTGCTGCCTCCGGTTCGAGAGAAGGTTCGGCAGTCGACATTAATGATGGAGAGATTTCGGCGTTACAAATGGAAATGGATCGGATGAAAGAAGAGAACAAAGCGTTGAGACGAGCTGTGGAACAAACCATGAAAGATTACTATGATCTTGAAACCAAAATTGGTATCATCCAACAAAACAACCTCACCAACAAGGACTCTCGTAGCTTTGTATTATTCCAAGGAAACGAGAAGAAGAGGCATGACATACGAAACCTAGACTTGGATCTCGAGGAAATGTCGAAGAAGAAGAGACGAGCTCGGTCGCCGCCATCGAAGGAGGAGGAGCTAAAGGAGAGGGAACTAGGGTTATCATTAGGGCTCCATACAAACAACAAAGAAGATAACCATAGGGAATTACAAGAAGAAACAAGAGAAAAGAACAAGACACAAAGGCCTGAGTTATTGCAAGGAATGGCACCCCCACAAAACAGGAAAACTAGGGTTTCTGTGCGAGCTAGATGTGAATCTGCCACTATGAACGATGGTTGTCAATGGAGGAAATATGGTCAAAAAATTGCAAAGGGTAATCCGTGCCCTCGAGCCTACTATCGTTGCACAGTTGCCCCGGGATGCCCCGTTAGAAAACAGGTCCAAAGATGCTTAGAAGACATGTCGATTCTGATAACAACGTACGAAGGAACACATAATCATCCACTCCCGGTCGGAGCCACAGCCATGGCTTCCACAGCTTCAGCAGCAGCTTCCTTCATGCTCTTGGACTCGGCTAATACTAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAAACCCTAATGAGCCCTCTGCCAACACCTTTTACAGCCCTTTAATGGCTGCCTCTTCCACCTCCGATTTGCCCCATTCCTTCTTCCATAGGAACTTTCAACCTAATCATCTTATGGGTTCCCTCCATGGCCGGAGTTGGAACGCTACCGACGGTAATAAGCCACCGCTGACGGCGGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTGGCGGCTGCCATTTCGACGCTTATTAATAAAGAGAAAAACCGCACGACGTCGATGCCGGATCCTATTGAACGTTCTTCTTCTTTTGGTTCTGGTAAGGACGGCGACGGCGGCGGCGGCGGCGGAAATAAGAATTGGGTTGTTGAGTCCCTCTCTTTGAATGGGAAGTAA 1275 46.82 MEIDLSLKIDQEQEHEHEHEQDQEQVAASGSREGSAVDINDGEISALQMEMDRMKEENKALRRAVEQTMKDYYDLETKIGIIQQNNLTNKDSRSFVLFQGNEKKRHDIRNLDLDLEEMSKKKRRARSPPSKEEELKERELGLSLGLHTNNKEDNHRELQEETREKNKTQRPELLQGMAPPQNRKTRVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSANTNPNILNSSSYSPNPNEPSANTFYSPLMAASSTSDLPHSFFHRNFQPNHLMGSLHGRSWNATDGNKPPLTAESVSAIASDPKFRVAVAAAISTLINKEKNRTTSMPDPIERSSSFGSGKDGDGGGGGGNKNWVVESLSLNGK 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2017973 2020758 - Carg11296-RA Car16g00329 163481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00329 424 MobiDBLite consensus disorder prediction 119 186 - -
Car16g00329 424 Pfam WRKY DNA -binding domain 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car16g00329 424 ProSiteProfiles WRKY domain profile. 193 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car16g00329 424 Coils Coil 44 71 - -
Car16g00329 424 MobiDBLite consensus disorder prediction 1 26 - -
Car16g00329 424 MobiDBLite consensus disorder prediction 119 141 - -
Car16g00329 424 MobiDBLite consensus disorder prediction 149 170 - -
Car16g00329 424 MobiDBLite consensus disorder prediction 381 424 - -
Car16g00329 424 MobiDBLite consensus disorder prediction 1 39 - -
Car16g00329 424 Coils Coil 101 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01502 Car-Chr11:12089406 Car16g00329 Car-Chr16:2017973 3.00E-49 dispersed
Car13g00772 Car-Chr13:8627371 Car16g00329 Car-Chr16:2017973 6.06E-53 dispersed
Car16g00329 Car-Chr16:2017973 Car19g00707 Car-Chr19:8146244 1.87E-42 dispersed
Car16g00329 Car-Chr16:2017973 Car04g00477 Car-Chr4:2691497 4.36E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4918 PF03106 WRKY 1.60E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00329 - - cmo:103496139 455.677