Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00344 ATGCAGATTCACCTCCTCCACCGCCCCGACACCGTCGAGAAAGACGGCGGTGAGGACAAGAAGGAAGATCGGAAGCACGGAAGCGACGACGATAACGATAGCGATAGCGATTTGCCATCATCGTTGAGCCTTAGAGAGCTTTCAAAGGTTATACTTCCACCTTTAGGAGTATCGAGCTTTACGGACGATAATAAAGTGAAGCACCATAAATGGATCATCTCTCCCATGAACTCAAAATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTACCCAATGGAAGTGGCGTTTATGGACGCGATTCCCAAGCGCCGATTGTTAATTGTAGATAATGTTGTCGATCTCTTCTTCGCCATTGACATCTTCTTCACCTTCTTCGTTGCTTACATTGATCATCGGACTCAGCTTCTCGTTCGCGATTCTAAGAAGATAGCTATTAGGTTTGAATTCTACATTCCTTGCAAATATGATATTTGTCTCCCTTTTGCCCTCCTAGGATTGCTCAGATTCTGGCGACTGCGACGTGTCAAGCAACTTTTTACAAGGCTCGAGAAGGACATTCGATTCAGCTACTTTTGGATTCGATGTGCTAGGCTTCTATTTGTTACTTTGCTCTATGTCCATTGTGCCGCATGCCTCTACTACATGTTGGCTGACCGGTATCCAAATGAAGGAAAGACATGGATTGGAACAGCGTTTCCAAATTTCAGAGAGACTAGCTTTGGAGTGAGATATGTTTCATCCATGTATTGGTCTATCACCACTATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCATGGAGATGATCTTTATAATCTTCTACATGCTCTTCAATCTCGGATTCAAAGCCGAGAGCCTAAACCAACAACACCTGATCGAACAGCTTCCGAAGTCGATTTGCCATAGCATCTGTCAGCAATTGTTTATGCCGACCGTGGAGAAACTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGTGATGCTGGTAGCCGAGATGAAAGCCGAGTATATACCGCCTAAAGAGGACGTGATAGTACATAACGAAAGCCCGGAAGAAGTTTATATCATTGTGTCCGGGGAAATCGAAATTATCGACTGTGAGACGGAGGTGGAACGGATTGTCGGGACATTACACTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCACAGCTTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAAGCTCAAAACAAGTGTGCTACAAGAAGCTATGCATATCAAACAAGAAGACAGTACAGTCATCGTCAAGAACTTCCTTCAGGAAAGGGAGCTGAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGACGACGCCGACTTTGATCGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAGTTAGATTTTAGTAGAGTTAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTCATCAGATTGCCACATTCAATGGAGGAGCTCAAAAGAGTTGCAGGTGAAAAGTTTGGATTTGATGCAACAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCCATTGATGTGATAAGGGATAATGATAAGCTTTTTTTCTCATAG 1683 43.73 MQIHLLHRPDTVEKDGGEDKKEDRKHGSDDDNDSDSDLPSSLSLRELSKVILPPLGVSSFTDDNKVKHHKWIISPMNSKYRWWQSFMVVLVAYSVWVYPMEVAFMDAIPKRRLLIVDNVVDLFFAIDIFFTFFVAYIDHRTQLLVRDSKKIAIRFEFYIPCKYDICLPFALLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLFVTLLYVHCAACLYYMLADRYPNEGKTWIGTAFPNFRETSFGVRYVSSMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGFKAESLNQQHLIEQLPKSICHSICQQLFMPTVEKLYLFKGVSKETLVMLVAEMKAEYIPPKEDVIVHNESPEEVYIIVSGEIEIIDCETEVERIVGTLHCGSMFGEVGALCCKNHSFTYRTKTLSQLLKLKTSVLQEAMHIKQEDSTVIVKNFLQERELSHKITIEGSPEKETTPTLIEEKDQSFNWKHSIELDFSRVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKRVAGEKFGFDATNAVLTNEEGSEIDSIDVIRDNDKLFFS 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2125422 2130758 + Carg11311-RA Car16g00344 163496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00344 560 MobiDBLite consensus disorder prediction 1 40 - -
Car16g00344 560 Pfam Ion transport protein 80 290 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car16g00344 560 ProSiteProfiles KHA domain profile. 488 560 IPR021789 -
Car16g00344 560 MobiDBLite consensus disorder prediction 7 33 - -
Car16g00344 560 ProSiteProfiles cAMP/cGMP binding motif profile. 328 447 IPR000595 -
Car16g00344 560 Pfam KHA, dimerisation domain of potassium ion channel 488 559 IPR021789 -
Car16g00344 560 Pfam Cyclic nucleotide-binding domain 351 430 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00439 Car-Chr13:6831686 Car16g00344 Car-Chr16:2125422 1.94E-08 dispersed
Car16g00344 Car-Chr16:2125422 Car06g00769 Car-Chr6:5866479 5.08E-56 dispersed
Car16g00344 Car-Chr16:2125422 Car04g00499 Car-Chr4:2822223 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00344 K21867 - csv:101205212 887.1