Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00368 ATGGTGCTGCTTTCTCTTGTCAAACCGACTATCCTCAAATGGATGTTATTATTCAGTTGCTTCTTTTCCTTCTCTTTGGCTCTGAAACAGCCTAATCAACTCTGTGATCCAAGAGATTTACTGGCATTGAGGGGCTTTCTGAATAGCCTTTCAAATAGTTCTGTTATCTCTGTATGGTTGAAGGAACCCAACTGCTGCATTTGGGATGGTGTCGTTTGTGGATATGATAGCAACAGTTCTATCACTAACAGAGTTACCAGGTTAGAACTGCCTAATATGAATCTGAAAGGCAAGATTTCACAATCTCTTGGTGGTTTGGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTTTTGCCAACAGAATTCTCAAGGTTGAAGCAACTCCAGGTGTTGGATTTGAGTTACAATAAGCTGTCAGGATCAGTCGCTAATGCAACTTCAGGATTGATATCTGTTCGTGTTCTTAATATTTCCAGCAATTCATTCATTGGGGATTTCCCCCAGCTAGTGGGATTTCAAAATCTTGTTGCCTTCAATATAAGTAACAATTCTTTCACAGGACAGTTTTCTTCACAGATTTGCAATTCCTCCAACATGATTCAGGTTGTTGATATTTCACTGAACCAAATATCCGGCAATCTTCAAGGAGTGAACGATTGCAGCAAATCTCTCAAACATTTCCGTGCAGATAATAACTTGCTTACTGGACATCTTCCAGAATCGTTGTATTCGTTATCGTTTTTGGAGTACTTTTCAATCCCTGGGAACAGCTTCTTTGGCCAGTTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATCGTATTCGGAAACAAGTTTTCTGGCGAACTTCCAAATGTGTTTGGTAATTTTTCAGAATTACGGGAGTTAGTTGCACATTCCAACTTGTTCTCTGGAATTCTGCCTTCATCTCTGTCATTGTGTTCAAAGCTTAGAGTTCTTGATCTTAGAAATAATTCCTTTACTGCTGCTATAGATCTCAATTTTTCTAGGCTACCAGATCTTCAAATGCTTGATCTAGCCTCTAATCACTTTTCGGGGCCTCTACCGAATTCTCTGTCTGATTGCCATGAATTGAAAACTCTTAGCCTTGCCAAGAACAAGTTAACTGGTCAAATTCCTCGAGATTATGCTAAGCTATCCTCTCTGTCCTTTCTATCTTTGTCAAACAATAGTATTATAGACTTGAGTGGTGCATTATCTATTCTACATAATTGCAAGAACCTGACTGTTCTTATTCTTACAAAGAACTTTCGTAATGAGGAAATTCCACAGAGTGAAACTGTTTTCGACAACTTGATGCTTTTGGCATTTGGTAACTGTGGCCTGAGAGGACAAATTCCAGGTTGGTTAGTAGGTTGCAAGAAATTAAGCATCCTGGATTTGTCTTGGAATCACTTAGATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAGAATTTATTTTATTTGGACTTATCCAACAACTCTCTGTCAGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAGAAACTGCAGCTTGTCGGGTTCGACATCGTCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTTCCACTGGTTTGCAATACAACCAAGCGTCGAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTGGCCAGAAATTGGTAGATTAAAAGGGCTGCATGCCTTGGATTTGAGTAGGAACAATATAACTGGGTCCATCCCAAACACCATATCGGAGATGGAGAACTTGGAAGCCTTAGATTTGTCGAATAATGATCTTTATGGACGAATTCCTCCATCACTCAACAAGCTCACATTCTTGTCAAAGTTCAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCAAATGGAGGGCAATTCTTAAGTTTTCCCAGCTCAAGCTTTGATGGTAATGCAGGACTTTGCGGGGAAATCGACAACCCTTGTCGTTCTGTTGATGGCTTAGAAAAAAGACCTGAAACCGACACTTACTCAAAGAGAAAAGTTGGGAGAAGTGTCATTCTCTGCCTTACAGTCGGAGCAGCTGCAGCAATCCTCCTGGTCCTTACAGTGGTTCTACTCAAAATGTCCAGGAAAGATGTTGGAGATCGGAATAACAGTTTTGACGAGGAATTTGACCGACCTAACAGGTTATCTGGAGCTCTTGGATCATCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACTTGCAATTTCAACCAAGCAAATATAATCGGCTGTGGTGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAACGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCATGAGATTGTTGATGATGAAGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCAGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAACCAAACATAATTCACCGCGATGTCAAGTCGAGCAACATACTTCTGGATGACAAATTCGAGGCTCATTTAGCTGATTTTGGCCTTTCAAGATTACTCCGGCCATATGACACTCATGTTACCACAGACTTGGTTGGGACATTGGGTTATATTCCTCCTGAATACAGCCAGACATTAATTGCTACTTGCCGGGGCGATGTTTACAGTTTTGGCGTTGTTCTTCTCGAGCTTCTAACTGGGCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCATGGGTGATTCAGAAGAAATCAGAAAAGAAAGAAGAGGAGATTATTGATCCTGCAATTTGGGATACAAATAGCAAAAAACAGATTCTAGAGGTCCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACATTGTAG 3150 40.98 MVLLSLVKPTILKWMLLFSCFFSFSLALKQPNQLCDPRDLLALRGFLNSLSNSSVISVWLKEPNCCIWDGVVCGYDSNSSITNRVTRLELPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTEFSRLKQLQVLDLSYNKLSGSVANATSGLISVRVLNISSNSFIGDFPQLVGFQNLVAFNISNNSFTGQFSSQICNSSNMIQVVDISLNQISGNLQGVNDCSKSLKHFRADNNLLTGHLPESLYSLSFLEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELRELVAHSNLFSGILPSSLSLCSKLRVLDLRNNSFTAAIDLNFSRLPDLQMLDLASNHFSGPLPNSLSDCHELKTLSLAKNKLTGQIPRDYAKLSSLSFLSLSNNSIIDLSGALSILHNCKNLTVLILTKNFRNEEIPQSETVFDNLMLLAFGNCGLRGQIPGWLVGCKKLSILDLSWNHLDGSIPAWIGQLENLFYLDLSNNSLSGEIPKSLTQMKALISRNCSLSGSTSSAGIPLFVKRNQSSTGLQYNQASSFPPSIYLSYNRINGTIWPEIGRLKGLHALDLSRNNITGSIPNTISEMENLEALDLSNNDLYGRIPPSLNKLTFLSKFSVANNHLEGPIPNGGQFLSFPSSSFDGNAGLCGEIDNPCRSVDGLEKRPETDTYSKRKVGRSVILCLTVGAAAAILLVLTVVLLKMSRKDVGDRNNSFDEEFDRPNRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEIVDDEDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDKFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLIATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKKEEEIIDPAIWDTNSKKQILEVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2277473 2280622 + Carg11335-RA Car16g00368 163520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00368 1049 Pfam Leucine Rich Repeat 494 513 IPR001611 GO:0005515
Car16g00368 1049 ProSiteProfiles Protein kinase domain profile. 772 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00368 1049 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Car16g00368 1049 Pfam Protein kinase domain 773 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00368 1049 Pfam Leucine rich repeat 560 615 IPR001611 GO:0005515
Car16g00368 1049 Pfam Leucine rich repeat 324 383 IPR001611 GO:0005515
Car16g00368 1049 Pfam Leucine rich repeat 84 143 IPR001611 GO:0005515
Car16g00368 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Car16g00368 1049 ProSitePatterns Protein kinases ATP-binding region signature. 778 800 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00368 - - - cmo:103496072 1852.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00919 Car-Chr4:5257114 Car16g00368 Car-Chr16:2277473 0 dispersed
Car08g00483 Car-Chr8:3074434 Car16g00368 Car-Chr16:2277473 0 dispersed
Car15g00813 Car-Chr15:4594990 Car16g00368 Car-Chr16:2277473 4.76E-143 dispersed
Car16g00368 Car-Chr16:2277473 Car18g01139 Car-Chr18:11318917 1.26E-08 dispersed
Car16g00368 Car-Chr16:2277473 Car16g00121 Car-Chr16:709313 7.43E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g193 . . . . Bpe09g00240 . . Bma13g00942 Cmo16g00436 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0157 Cone9ag0181 Cone14ag1058 . . . . . . Blo10g00752 . . . . . . . . . . Cma16g00736 . Car16g00368 Cpe14g00338 . . . . . . . . Cla05g01002 . . . . . . . . Chy06g01163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011381 0 1 1 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 14
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89433 PF00069 Pkinase 7.80E-44 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00368 Car_Chr16 FPKM 6.905914 7.133698 0.0 0.0 0.304903 0.304105 0.0 0.143968 0.0 0.0