Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00371 ATGCGAGTTTCATCGGGTTCAGTTTCGTCGTCATTGAAGCAGAGTGACAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAAAAGCTTGATGCCATATGCGAAAAAGAGTATAGTCGAAACCATGGAGATGTGAATGAGAATGGCAGTGGATTGGGGATTGTGGAGGCTGACCTTGGGCTTCGGCGGAGCAGCCGTGTCCGTAGGGCCCCAGTCTTGCTCGATGCTTCCCCTATGCCAAAGAAGAAGCGGCGGAAGGTTCATGGGAATGAAACTTCGGGCGTTAAAACGAGTGCTAACTCTCTGCCTCAGTTAAGTGATGAATTGAATGATGAGAAGCCCGACAATTGGAGATCAAGGTTGAGATCAGGGAACAGAAATTTGGGGATTAGAGTGGAAAAAGGAACTCGGGCAAGCAGGAAAAGAAAACTTTTTGATGAAATTGTTGATGTGGAAGTAAAAAGTAGTGGAATGAGGAGATTTGGAGTGACAAATGATCAAATTAACATAGAGAAAGAGGTGAAATCTCCTAAAATTAAGGATGGTTGTTGCAGGGAAGACATCTTGGATATCGATAACGAAGATGATGATGAGGAGGAGGCTGAGGAGTGGGAGGAAGAAGAAGAAGAAGTAGAAGAAGAAGGGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAAAAGAAGGGGAGGAGGAGGAGGAGGAGGTGGTGGAGGGCAAGGAAGCCATGACTGCAAAGAATGAGAGAGAGGACGTTTTGCCTTTGGAAAATGAAATGGATGGCAAAAATGTGAAAGCAGTGGATGATGTTATTCCTGAGGTTGTTGAAAAATTGGACAAAGAAACTTCGAGTTCTTTTCATGTAGATGAGGCTTGTAGCGTCGATCACAATGAAGAACCAGCCAATGTGGTGGAGAATTCAAACAATGGTGAGATACCGCTGGAAGAAGTAACACGACTAAATGAAGGCATAAATGAAATTCATGATGTAGAAGCTGCTGTAGTTTCAGCAAATGAAGTGGTAGGTGGAAGGCATTGCGACGAGAAAGCTATTGATTTGGGAAAGTTTACTGAAAAGTCTAGGCAACATAGTGGTGATTTAAATTTAAAGAAGTTTACAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCTCCAAAGAAGTTAGTTCAGGATTCGGGTGAGAGTGAAAATGAAGCTTGTAGTGGTTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGTGATGAACCTGGATGGCTTGGACGCCTATTAGGTCCTATTAATGATCGTTATGGCATTGCTGGAATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAGTGCACTCGGTGTGGGAGACCTGGCGCAACCATCGGATGTCGTGTTGATCGATGCCCAAGAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGGAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCATGGAAATCAATATTTAGCTCGGATAAAGAGATTGAAGGCCAAGAAAATGAAACTGGAAATAAAAAAGCAATCAAATGATGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGTTGGAGAATTGCGGGGAGGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTGAGAATTGCACCTGTATATATTGGTGGCTCAAACTCAGAAGGAGAGAACTTATATCGTGGTTGGGAGTCTGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAGGAAGTAGTATTCTTACCACTCTTGTATCCTGAGCTTTTCGATCGCTTTGGGATTACACCTCCTAGAGGTGTTCTGTTGCATGGATATCCTGGAACTGGTAAAACACACGTTGTGCGAGCACTAATAGGTTCTTGTGCTCGTGGTGATAAACGAATTGCATATTTTGCTCGTAAAGGAGCTGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAATTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGGTTGGCACCTTGTCGCACAAGGCAGCAAGATCAAACCCATAATTCAGTTGTGTCTACATTACTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTCGTAGTTATTGGTGCAACAAATCGCCCTGAGGCAGTTGATCCAGCATTAAGGAGGCCTGGGAGGTTTGACCGTGAGATTTATTTTCCTTTGCCATCGGTTGAGGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGAGGGACCCTTGCTCCAGTGGATTGCAAGAAGGACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACTCAAGCAGCCATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAAAAGTTCTATCAGCTTCTGGGGAACAAGCTTCGAGAGATAACTGCCCTCCTCTCCCTTCCATTTTAGTGGAGGAGCGGGATTGGTTAGAAGCTCTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGAATGGCTGCTAATGATGTGGCATCCTCTCCTCTTCCCTCCCATCTCATTCCTTGTCTACTTCAACCACTGTCAGCTTTACTCGTTTCCCTTTATCTTGATGAACGCATCAGCTTGCCAGCTAATCTTTTAAAAGCTGCAACTTTAATCAAAAGTGTGATTGTTACTGCTTTGGATGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCTTATGTTCACGATTTTCTTCAGGATGCTGATATTGCAAATGAGATAGAGATAAAGCTGCAGGGTTCTGGAGTGTTACTGGAGGAATCTACTTTTGTTGGTTCTGGTGTTCTCAACAATGAAACAGGCAATGATAGTTCCAAGTTTGAAAGTGTAGGTCATCGTGGTGGCCCACCCACTACTATGGTAGAGTCACCATTCACCTTGGAAAATAAGTCTGGCTTCCGTATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCTTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGTAAGGTGGATATAGCTACAATTTCACAAGAAGGTCATGTGAATTGCTCTAGCATGGGATCGTGCCTTTTGTTCATGCCAAGAATTGATTTGTGGGCTATTGAATCACAAAATCAAACATCTGAGGAGTGCGGTTTCTATCTGAATGAGGAACAGTACCCCAAGGATGGAATTATTGTCAAAGACGGTCTCCTTGGTGGAAGAGGAAACCATAGTTATTCAGACCAAAGCAAATCAACCAAGAGGACCGGACTTCAAGACGAATCTCTCTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCTCTATCTACACCCTTGATGATTTTGGCCACATCAGAAGTTCCATTTTTGCTACTTCCACAAGAGATAAGGCGGTTCTTCAGGAATGACTTGTCAATTTGTCGGCCAACTACTACAGAGCATTCAGTACCTAGATTCTCTGTGCAGATTGATGGAGGTTTTGACCATGACATGGTAATCAATCAGTCTGCTACAGAATTATCAAGGGACATACTGAAACTTCTTGTTCATTTGATTCACCAAAAGGCACACACTAAAACATCTATTTGCACAAAGAACGAAATTTCTGTTACCCAAGATGAGAGTAATGCTGCAGATCAGCGAATAGATAAAGAAACTGCCAGCGAGCACACTGGAGAAAAGAAGTCCCCTGATGTGTCTTCTGTTAGAATTGTACCACTACCTGGCAGTAGAACCATGAGAGTGAAATCAAACTTGAGTTCAGTAATATCTACTTTTGGGTATCAGATTCTGCGATACCCCCATTTCGCCGAGCTTTGTTGGGTGACATCAAAATTGAAAGAAGGCCCCTCTGCAGATGTTAGTGGACCCTGGAAGGGATGGCCATTCAATTCTTGTATCGTTCGCCCGATGAATGCTTTGGAGAAGGTAGCATCAAGCAGCACGAGTAATGGAAAATCTAAGGAAATTTCGGGTATGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCAATCAGAGGTGCCTACACATCATTAAGGAAAGTCTCCTTTGATGTGCGATTGGTACTCGACCTCTTAGTCGAACAGATAAATGCAAAAATTAATTCTGGGAAAGACCGGTATCGATATTTTCGCCTTCTATCACAAGTTGCATATCTGGAAGACGTTGTTAATAGCTGGGTCTTCACTCTGCACAGCTTGGAACAGGACTCGAAAAATATTGAAACATCAACGAATCATGCTTCTGGTGGTAACGAGATTTCGTGTGAGAAAAACGAACCCATTATATCCAACGAGGACTGTCTTACACATGAAATTCCAGAAGAAAGTTGTCAGGAACCTGTTGATGAGGAAAAAGTTGTACGTATTGATTCCTTGGTAGATGGTGATTTGAATCAGTCTAATTCCCAGGATACAACATTCATATCAGGAGGACATGGAGATGGGAATTTCTGCAGTAAGTCAGTCTCCAACCAGTCCCATGACATTGCTGCTGATGACGACGACCAGTTAACTGATAATATTCCACTGAATGAGACGACTGTTGTTGCACCGGATGATTTGGAGGACAATAGAAACGACACATCGGTTAAAGAGCCTTTAAATTTAGGAACGGAATCAGTTTTCGAGTTGGAAGATCATCATCATCATCATCATCATCAAAATTCAAGTGAGGTATGTGCTGATGAAATCCCTAGCTGCACAAAACCCTGCAACTATAGTAATGGGTGTTGCACCTTAGAAAATGGTTGCAAATGTGATGGTTGTAAGCCCGACACAGACACGAATGACCGTGAAGTGAATGTTCACTCATCTCCCAGCAGAAGTGACCTCTCAACTAGCTCTGCACAAGTATGTTCTATTCGGTGCTGCACTGGTTGTTTAAACATCCTCTACGGTGCAACGAGAACCATTCTTCACAACGAACTCGGATCGAATTGGAATAATTGGACTGTGGAGGACGTTCATGACATTGTTGCAGCGCTCTCAGTCGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTCGTGTATTTAACGATAGACGAAAGGCCTCAGACTCGAGATCTTGTGATTGCAAAAGTTGGAAAGACATGGTTTTTACGGCAGTGGAATGTATTTGTCACTGTGAGAAGGAAAGTTGGAGTGAAAAGGGCCGAAAACGACCGGCGACAAAAGGGGGTGTCCAGAGCAAAAAAGGCAAACCCACGGCTGAAAATTGA 5487 43.32 MRVSSGSVSSSLKQSDNRSGSRLKKKHKKLDAICEKEYSRNHGDVNENGSGLGIVEADLGLRRSSRVRRAPVLLDASPMPKKKRRKVHGNETSGVKTSANSLPQLSDELNDEKPDNWRSRLRSGNRNLGIRVEKGTRASRKRKLFDEIVDVEVKSSGMRRFGVTNDQINIEKEVKSPKIKDGCCREDILDIDNEDDDEEEAEEWEEEEEEVEEEGEEEEEEEEEEEEEEEQEEKEGEEEEEEVVEGKEAMTAKNEREDVLPLENEMDGKNVKAVDDVIPEVVEKLDKETSSSFHVDEACSVDHNEEPANVVENSNNGEIPLEEVTRLNEGINEIHDVEAAVVSANEVVGGRHCDEKAIDLGKFTEKSRQHSGDLNLKKFTDSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKLVQDSGESENEACSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLYRGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVEGPLLQWIARRTAGFAGADLQALCTQAAMSALKRNFPLKKVLSASGEQASRDNCPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVASSPLPSHLIPCLLQPLSALLVSLYLDERISLPANLLKAATLIKSVIVTALDGRKIVTSCWWSYVHDFLQDADIANEIEIKLQGSGVLLEESTFVGSGVLNNETGNDSSKFESVGHRGGPPTTMVESPFTLENKSGFRILIAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHVNCSSMGSCLLFMPRIDLWAIESQNQTSEECGFYLNEEQYPKDGIIVKDGLLGGRGNHSYSDQSKSTKRTGLQDESLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRRFFRNDLSICRPTTTEHSVPRFSVQIDGGFDHDMVINQSATELSRDILKLLVHLIHQKAHTKTSICTKNEISVTQDESNAADQRIDKETASEHTGEKKSPDVSSVRIVPLPGSRTMRVKSNLSSVISTFGYQILRYPHFAELCWVTSKLKEGPSADVSGPWKGWPFNSCIVRPMNALEKVASSSTSNGKSKEISGMVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLDLLVEQINAKINSGKDRYRYFRLLSQVAYLEDVVNSWVFTLHSLEQDSKNIETSTNHASGGNEISCEKNEPIISNEDCLTHEIPEESCQEPVDEEKVVRIDSLVDGDLNQSNSQDTTFISGGHGDGNFCSKSVSNQSHDIAADDDDQLTDNIPLNETTVVAPDDLEDNRNDTSVKEPLNLGTESVFELEDHHHHHHHQNSSEVCADEIPSCTKPCNYSNGCCTLENGCKCDGCKPDTDTNDREVNVHSSPSRSDLSTSSAQVCSIRCCTGCLNILYGATRTILHNELGSNWNNWTVEDVHDIVAALSVDLLAAVRRAFLDGNDTRVFNDRRKASDSRSCDCKSWKDMVFTAVECICHCEKESWSEKGRKRPATKGGVQSKKGKPTAEN 1828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2291582 2301982 + Carg11338-RA Car16g00371 163523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00371 1828 MobiDBLite consensus disorder prediction 1 30 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 1290 1320 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 190 263 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 419 433 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 1294 1314 - -
Car16g00371 1828 ProSiteProfiles Extended PHD (ePHD) domain profile. 427 547 IPR034732 -
Car16g00371 1828 MobiDBLite consensus disorder prediction 1802 1828 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 190 245 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 92 107 - -
Car16g00371 1828 ProSitePatterns AAA-protein family signature. 778 796 IPR003960 GO:0005524|GO:0016887
Car16g00371 1828 Pfam AAA+ lid domain 834 866 IPR041569 -
Car16g00371 1828 MobiDBLite consensus disorder prediction 66 122 - -
Car16g00371 1828 SMART AAA_5 669 810 IPR003593 -
Car16g00371 1828 MobiDBLite consensus disorder prediction 411 437 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 1 17 - -
Car16g00371 1828 MobiDBLite consensus disorder prediction 246 263 - -
Car16g00371 1828 Coils Coil 194 247 - -
Car16g00371 1828 CDD AAA 669 808 - -
Car16g00371 1828 Pfam PHD-like zinc-binding domain 468 547 - -
Car16g00371 1828 Pfam ATPase family associated with various cellular activities (AAA) 673 808 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00371 - - - csv:101208571 2567.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00371 Car-Chr16:2291582 Car03g01098 Car-Chr3:8868025 1.01E-41 dispersed
Car16g00371 Car-Chr16:2291582 Car06g00336 Car-Chr6:1834205 1.01E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00371 Car_Chr16 FPKM 0.596672 0.316796 0.725953 0.689991 1.641881 1.474634 1.407582 0.720539 0.535265 0.558336