Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00373 ATGGCTTCCTTCTCTGTTCATCCTAATCATATAATGGCGTTTTCAGAAGAAAGCTTGATGGCCACTCCATTTCCCAGGTACCCATTTCCTCAATCTCTCCCTTTCTTCCCTTTTTTATCATTTCCCCTTTTGTGCCCACCATCCATGGACCCAATCAATGCCTCTCTTCAATCTTCTCCTTCAAGCGATGTGCCGCTCATTGATGAAGCTTTGGATCGTTTAGAGCTCTGTTGGTTCTTTGATAATCTCCTTACTTGGAGGAACCCCCGGATGTCTACCTCCCGTTCTGATCCTTGTCTTTCTAATGTTGCCCATCAGGTGTTTGATGAAAGTCCTGCTGCTAATCTCTGCTCATCTGATTTGGATGGGGATGTTTCGCTGCCTAATGGTGGTGGGGTGCGTCGGAATCTGCTTCGAACGCCGTCGTTACCGTCACGTATGGATCTAGGAGGGGAGGGAATTCGAGAGAAAGGAAGTGGTTCTAGGCCATTGTTGGAGCATGATGTGCTTGTTGAAACTCCTGGTGATAATGTTTGCTCGTCTGCTTTGGATATGGATGTTTCGATTGGAAATGGTGGTGGTAAACATAGGAGTCTCCTTCGAACACCGTCATTACAGTCCCGTGTGGACCGAGAGGAAGGAATTCGAGATAAAGGAAGTGGTTCTAGGCCATTATCAGAGCATGATGTTCTTGTAGAAACTCCTGCTGATAATGTTTGCTCGTCTTCTTTGGATATGGATGTTTCGATCGGAAATGGTTGTTGTAAACATAGGAGTCTCCTTCGGACACCGTCGTTACCGTCCCGTGTGGACCGAGAGGAAGGAATTCAGGAGAAAGGAAGTGGTTCTAGGCCATTAGCAGAGCATGATGTTCTTGTAGAAAGTCCTGCTGATAATGTCTGCTTATCTGCTATGGATATCAATGTTTCGCCGGGATATGGTGGTGGTAAATGTCGGAGTCTACTCCGGATGCCTTCGTTACCGTCCCGTGTGGAACGAGAACAAGGTATTCGAGAGAAAGGGAATGATTCCAAGCCATTAATAGAACATGGGTTGCTTCAAAAACCAGCCAAACCACCATATGTAGAGAGGAAAGAAGAAGGAACTCGCAGCAAAGAAAGTAGTAGCACTCGAAAGAGCAAATCCGCAAGGAAACCACGGAATGGCAATCTGCTAAGAACACCATCTTTGCCACCATTTATAGGCAGAGAAAAGGAATTTGGAGAGAAGGAAGCTGCTGCTAGAATCAGAAACTCCATTCAACCGAACCTTTCTGAATTCTTTCCCACAAGACAAGAGATTCTTGAAAAGAACTTCAGCCTCCCGACGTGTCGAATCCCGACAAACAGCGACAGAATGTGGCACCAATTTCTCATCCAAATGAGGAAAAGAAGAAGCCAAAGTGAGCTTGAATCAGAAGAATTGCAAGGGTTCAAGGACTTGGGATTCACATTTGACAAAAAGGATATAAACCCAACAGTGGTTGACATAATTCCAGGGTTGAGAGAGAAAAAAGAGGAAGAATTAGACAGTGAAAGAGCAAGAAGACCTTATCTTTCTGAAGCTTGGATGCTCCAAAATCATCTCCTCCCTCCCATCCCAAAATGGGACAGTAGAAAATCTGCTGAAGACATGAAACAACAAATCAAGTTCTGGGCTAGAGCTGTTGCTTCCAATGTGCACTAA 1686 45.14 MASFSVHPNHIMAFSEESLMATPFPRYPFPQSLPFFPFLSFPLLCPPSMDPINASLQSSPSSDVPLIDEALDRLELCWFFDNLLTWRNPRMSTSRSDPCLSNVAHQVFDESPAANLCSSDLDGDVSLPNGGGVRRNLLRTPSLPSRMDLGGEGIREKGSGSRPLLEHDVLVETPGDNVCSSALDMDVSIGNGGGKHRSLLRTPSLQSRVDREEGIRDKGSGSRPLSEHDVLVETPADNVCSSSLDMDVSIGNGCCKHRSLLRTPSLPSRVDREEGIQEKGSGSRPLAEHDVLVESPADNVCLSAMDINVSPGYGGGKCRSLLRMPSLPSRVEREQGIREKGNDSKPLIEHGLLQKPAKPPYVERKEEGTRSKESSSTRKSKSARKPRNGNLLRTPSLPPFIGREKEFGEKEAAARIRNSIQPNLSEFFPTRQEILEKNFSLPTCRIPTNSDRMWHQFLIQMRKRRSQSELESEELQGFKDLGFTFDKKDINPTVVDIIPGLREKKEEELDSERARRPYLSEAWMLQNHLLPPIPKWDSRKSAEDMKQQIKFWARAVASNVH 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2309559 2312084 - Carg11340-RA Car16g00373 163525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00373 561 MobiDBLite consensus disorder prediction 206 224 - -
Car16g00373 561 MobiDBLite consensus disorder prediction 194 228 - -
Car16g00373 561 MobiDBLite consensus disorder prediction 332 346 - -
Car16g00373 561 MobiDBLite consensus disorder prediction 359 380 - -
Car16g00373 561 MobiDBLite consensus disorder prediction 265 287 - -
Car16g00373 561 MobiDBLite consensus disorder prediction 326 402 - -
Car16g00373 561 MobiDBLite consensus disorder prediction 267 285 - -
Car16g00373 561 MobiDBLite consensus disorder prediction 135 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00373 - - - mcha:111012857 715.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01196 Car-Chr3:9412229 Car16g00373 Car-Chr16:2309559 1.28E-07 dispersed
Car13g00469 Car-Chr13:7001122 Car16g00373 Car-Chr16:2309559 2.07E-15 dispersed
Car16g00373 Car-Chr16:2309559 Car19g00795 Car-Chr19:8605897 5.71E-14 dispersed
Car16g00373 Car-Chr16:2309559 Car18g00405 Car-Chr18:2499573 5.89E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car16g00373 Cpe14g00343 . . . . . . . . Cla05g00996 Cam05g1087 Cec05g1095 Cco05g1089 Clacu05g1081 Cmu05g1031 Cre05g1105 . . Chy06g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012894 0 4 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00373 Car_Chr16 FPKM 32.53923 28.805908 0.0 0.0 0.0 0.377719 0.437018 0.0 0.0 0.0