Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00374 ATGCGAGCTCTACTGCGATGTCGCGCCTCTAAATTCGAACATGGATCGCCATTTCTCGCTGGATTTAGAACCATCGTCACCACTTGCAGAGCCGTGGTTTTGCCTCACTTTGGTGGTCCGGAGGTGCTCCAGCTCCGCTCTGACGTTGACGTCCCCAACCTCAAGCCTGATGAAGTTCTCGTCCGCGCGCGTGCTGTTTCCATCAACCCGCTTGATACCCGAATGCGATCGGGTTATGGTCGCTCAATTTTTGAACCACTTTTACCGGTCATTTTGGGCCGTGATATCAGTGGTGAAGTTGCGGCTGTTGGTTCTTCGGTTCGTTCAGTAAGTGTTGGAGAAGAAGTTTTTGGTGCTTTGCATCCAACTGCCGTGAGGGGTACTTACGCTGATTACGCAATACTTTCAGCAGATGAATTAAGTGCTAAGCCAGGATCATTTACACATGTGGAAGCCAGTGCCATTCCTTTTGCTGCACTGACTGCATGGCGGGCTCTAAAAAGTACTGCTAGAATCAAAGAGGGGCAACGGGTATTAGTAATTGGCGGTGGAGGAGCTGTAGGTTATGCTGCTGTTCAGATATCAGTTGCTTCAGGCTGCCATGTTGCAACTACTTGTGGAAGTCAAAGTATCGATAAATTACTGGCAGCAGGTGCTGAGCAAGCAGTTGACTATACTACTGAGGGCATTGAATTCACACTAAAGGGGAAATTTGATGCCGTTTTGGATACAATTGGTGTGCCAGATACGGAAAGAATTGGCATCCATCTTTTGAATAGAGGTGGACACTATATGACACTTCAGGGCGAGGCTGCATCATTGACTGATAGATACGGGCTAGTTCTCGGGCTTCCTATTGCTACAAGCATACTGTTGCAGAAACAGTTACAGTACAGATGCTCTCATGGAATTGAGTACTGGTGGACGTACATGAGAGCGGATTCTGAAGGTTTAGACGAGATCAGGAGGCTATGTGAAGCTGGAAAGCTAAAGATACCGGTTGAGAAAACATTTCCGATCACACAAGTAAGGGAGGCTCATGAGGCAAAGGATAAGAACATCATTCCAGGTAAAGTGGTGCTAGAACTTGATTGA 1095 47.4 MRALLRCRASKFEHGSPFLAGFRTIVTTCRAVVLPHFGGPEVLQLRSDVDVPNLKPDEVLVRARAVSINPLDTRMRSGYGRSIFEPLLPVILGRDISGEVAAVGSSVRSVSVGEEVFGALHPTAVRGTYADYAILSADELSAKPGSFTHVEASAIPFAALTAWRALKSTARIKEGQRVLVIGGGGAVGYAAVQISVASGCHVATTCGSQSIDKLLAAGAEQAVDYTTEGIEFTLKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVLGLPIATSILLQKQLQYRCSHGIEYWWTYMRADSEGLDEIRRLCEAGKLKIPVEKTFPITQVREAHEAKDKNIIPGKVVLELD 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2314024 2318403 - Carg11341-RA Car16g00374 163526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00374 364 Pfam Alcohol dehydrogenase GroES-like domain 56 118 IPR013154 -
Car16g00374 364 Pfam Zinc-binding dehydrogenase 218 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00374 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - csv:101207846 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00374 Car-Chr16:2314024 Car17g01191 Car-Chr17:9121925 3.07E-23 dispersed
Car16g00374 Car-Chr16:2314024 Car08g00204 Car-Chr8:1270914 1.46E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g158 . . . . . . . . Cmo16g00442 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0174 Cone9ag0199 . . . . . . . . . . . . Bma07g01163 . . . . . Cma16g00410 . Car16g00374 Cpe14g00344 . . . . . . . . Cla05g00993 Cam05g1084 Cec05g1092 Cco05g1086 Clacu05g1078 Cmu05g1028 Cre05g1102 . . Chy06g01171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00374 Car_Chr16 FPKM 6.852749 6.183185 5.184459 5.143957 9.434017 8.357201 9.604429 2.63724 2.781274 2.639407