Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00385 ATGTTGAAGCAACTCTCGTTCGATCGACAAATTCATTCCGCCTTTCCGTTAGCATTGGCAGCTTTTCTCATCTTAGGACTCGCTCGGCTAGTTTTAGATGATCTCAAGAGTCATGGAAGCTTTGTCTTCAAGATGTACGGCCGACCGAGAAGCGAAACCCGTCACCGACTACCTGTTGTTGTTTCTTCAAAGGATCTCGTAGACGAAGACTGCAATTTGTTCGACGGGAAATGGGAATGGGATAATGCATCATACCCTCTTTATGAAGAAGAGACATGCCCATATTTAGTTAAACAAGTTACTTGCCAAAAGAATGGAAGACCTGATTCTTTCTACAAGAAGTGGAGATGGCAGCCTAATTCTTGCAATTTACCGAGGTTTGATCCATTGAAGCTGTTGGATATTTTGAGGGACAAAAGAATAATGTTTGTTGGGGATTCAATACAGAGAGGGCAATTTGAATCAATGGTCTGCTTGGTTCAATCAGCCATTCCCAAAGGAAAGAAATCCCTTCAAAGAGTTCCTCCCAGGAAGATCTTCAAAGTTGAGGATTACAATGTATCCATTGAGTACTACTGGGCACCGTTTATAGTTGAGTCCATCTCTGATCATGCAACCAACCATACAGTGTTGAAAAGAATGGTGAAGCTTGACTCCATAGCTAACCATGGCAAGCACTGGAAAGGGGTTGATGTTTTGGTGTTTGAGAGCTACGTCTGGTGGAGATACAAACCCGTGATCAATGCAACGTATGGATCTCCAGAGGATGTAAAAGAGTATAATGTGAGCATGGCATACAGATTGGCAATGGAAACATGGGCAAATTGGCTAGAATCCAACATCAACCCAAAGTCTCAAAACGTCTTCTTCATGACAATGTCTCCAACACATTTGTGGAGCTGGGAATGGAGGCCAGGAAGTGATGAGAACTGCTTCAACGAGTCTCAACCAATGCACCATCCACACTGGGGCACTGGTTCTAGCACAGAGATTATGGAAATAATTCATGATACTATACAGAATCTCAAAGTAGATGTAACTATATTAAACATTACACAGCTATCAGAGTTTCGAAAGGATGCACATACGTCGGTTTACGGGGAGCGTCGAGGCAAGCTTTTGACCAAAGAACAGAGATCTGATCCAAAAAATTTTGCAGATTGCATCCATTGGTGTTTACCAGGAGTTCCCGATACATGGAATGAAATTTTGTATGCTTACTTGTTAAGAAACCATCAAAATCTTCCATAG 1251 42.13 MLKQLSFDRQIHSAFPLALAAFLILGLARLVLDDLKSHGSFVFKMYGRPRSETRHRLPVVVSSKDLVDEDCNLFDGKWEWDNASYPLYEEETCPYLVKQVTCQKNGRPDSFYKKWRWQPNSCNLPRFDPLKLLDILRDKRIMFVGDSIQRGQFESMVCLVQSAIPKGKKSLQRVPPRKIFKVEDYNVSIEYYWAPFIVESISDHATNHTVLKRMVKLDSIANHGKHWKGVDVLVFESYVWWRYKPVINATYGSPEDVKEYNVSMAYRLAMETWANWLESNINPKSQNVFFMTMSPTHLWSWEWRPGSDENCFNESQPMHHPHWGTGSSTEIMEIIHDTIQNLKVDVTILNITQLSEFRKDAHTSVYGERRGKLLTKEQRSDPKNFADCIHWCLPGVPDTWNEILYAYLLRNHQNLP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2375042 2377121 + Carg11352-RA Car16g00385 163537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00385 416 Pfam PMR5 N terminal Domain 70 123 IPR025846 -
Car16g00385 416 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 124 406 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00385 - - - csv:101210661 806.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02788 Car-Chr4:21355475 Car16g00385 Car-Chr16:2375042 4.24E-122 dispersed
Car07g01045 Car-Chr7:6064944 Car16g00385 Car-Chr16:2375042 3.34E-120 dispersed
Car15g00148 Car-Chr15:821115 Car16g00385 Car-Chr16:2375042 3.62E-122 dispersed
Car16g00385 Car-Chr16:2375042 Car03g00304 Car-Chr3:4099263 2.59E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g133 . . . . . . . Bma13g00934 Cmo16g00453 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1016 . . . . . . . . . . . . . . . . Cma16g00420 . Car16g00385 Cpe14g00355 . . . . . . . . Cla07g00950 Cam07g1025 Cec07g1095 Cco07g1074 Clacu07g0994 Cmu07g0990 Cre07g1365 . . Chy07g00964 Cme07g01334
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012140 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00385 Car_Chr16 FPKM 3.52595 3.826467 4.448279 4.393112 4.070077 3.707458 4.458237 6.470695 6.1903 6.348103