Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g00390 | ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGATTCTTCATCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTTTGTTTAGAGGATCGTGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTTACTGGGGTGAAAGTGGCGCTTGAGCCAACTGATCCTGTTCCTTGTTCTTCCATGCCCAAGTCACATTCTCAAGTGAAACCTACTGAGACAAAAGTTAGACCTCTGTCTGAAAGGGAATTCTCGTTGCCTTCTCCTGGTGAACTCAGCAGATGCCTGTCTGTACAAGGTGGATCTGAGGACTTCATGGCAAATGGAACGTTCCATACCGGAGATACTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGACCTTATTAATCTGACTGGATTCAATCAGAACTATGGGTTTTTGGATAGCGGATCATCCAAGGCTGATAGCGGCAAGCTCGGGGATTCTGATTCATCTCCAGTTTTAAGGGCTGCTGACGTTGAGCTAGACGACAACGATGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTCTGTTCCTGACATTTCCGGTTCTTCCGAAAAGGTTCAACATTGCTCACATAATGGTAGATTCTTGAAACGACGGAGGCAGTTCTAG | 891 | 47.59 | MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSDSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVPCSSMPKSHSQVKPTETKVRPLSEREFSLPSPGELSRCLSVQGGSEDFMANGTFHTGDTVSGGFSQWQMDDLINLTGFNQNYGFLDSGSSKADSGKLGDSDSSPVLRAADVELDDNDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVSVPDISGSSEKVQHCSHNGRFLKRRRQF | 296 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 2396513 | 2400422 | - | Carg11357-RA | Car16g00390 | 163542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g00390 | 296 | MobiDBLite | consensus disorder prediction | 115 | 129 | - | - | |
| Car16g00390 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
| Car16g00390 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Car16g00390 | 296 | MobiDBLite | consensus disorder prediction | 113 | 145 | - | - | |
| Car16g00390 | 296 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
| Car16g00390 | 296 | Pfam | B-box zinc finger | 4 | 47 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00177 | Car-Chr8:1086956 | Car16g00390 | Car-Chr16:2396513 | 5.96E-09 | dispersed | |
| Car12g00406 | Car-Chr12:2587799 | Car16g00390 | Car-Chr16:2396513 | 3.72E-37 | dispersed | |
| Car16g00390 | Car-Chr16:2396513 | Car20g00702 | Car-Chr20:4019655 | 9.19E-35 | dispersed | |
| Car16g00390 | Car-Chr16:2396513 | Car04g00611 | Car-Chr4:3501007 | 0 | wgd | |
| Car16g00390 | Car-Chr16:2396513 | Car04g00611 | Car-Chr4:3501007 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4921 | PF00643 | zf-B_box | 3.60E-07 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g00390 | - | - | bhj:120091143 | 550.051 |