Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00390 ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGATTCTTCATCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTTTGTTTAGAGGATCGTGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTTACTGGGGTGAAAGTGGCGCTTGAGCCAACTGATCCTGTTCCTTGTTCTTCCATGCCCAAGTCACATTCTCAAGTGAAACCTACTGAGACAAAAGTTAGACCTCTGTCTGAAAGGGAATTCTCGTTGCCTTCTCCTGGTGAACTCAGCAGATGCCTGTCTGTACAAGGTGGATCTGAGGACTTCATGGCAAATGGAACGTTCCATACCGGAGATACTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGACCTTATTAATCTGACTGGATTCAATCAGAACTATGGGTTTTTGGATAGCGGATCATCCAAGGCTGATAGCGGCAAGCTCGGGGATTCTGATTCATCTCCAGTTTTAAGGGCTGCTGACGTTGAGCTAGACGACAACGATGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTCTGTTCCTGACATTTCCGGTTCTTCCGAAAAGGTTCAACATTGCTCACATAATGGTAGATTCTTGAAACGACGGAGGCAGTTCTAG 891 47.59 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSDSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVPCSSMPKSHSQVKPTETKVRPLSEREFSLPSPGELSRCLSVQGGSEDFMANGTFHTGDTVSGGFSQWQMDDLINLTGFNQNYGFLDSGSSKADSGKLGDSDSSPVLRAADVELDDNDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVSVPDISGSSEKVQHCSHNGRFLKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2396513 2400422 - Carg11357-RA Car16g00390 163542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00390 296 MobiDBLite consensus disorder prediction 115 129 - -
Car16g00390 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Car16g00390 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car16g00390 296 MobiDBLite consensus disorder prediction 113 145 - -
Car16g00390 296 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Car16g00390 296 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00390 - - - bhj:120091143 550.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00177 Car-Chr8:1086956 Car16g00390 Car-Chr16:2396513 5.96E-09 dispersed
Car12g00406 Car-Chr12:2587799 Car16g00390 Car-Chr16:2396513 3.72E-37 dispersed
Car16g00390 Car-Chr16:2396513 Car20g00702 Car-Chr20:4019655 9.19E-35 dispersed
Car16g00390 Car-Chr16:2396513 Car04g00611 Car-Chr4:3501007 0 wgd
Car16g00390 Car-Chr16:2396513 Car04g00611 Car-Chr4:3501007 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00003 CST 1 382 Orphan Transcription Factor Family AT5G61850 67.2 2.3e-121 433.0
Car10g00006 CST 1 385 Orphan Transcription Factor Family AT5G61850 66.8 3.0e-121 432.6
Car08g00177 CST 1 161 Orphan Transcription Factor Family AT1G06040 69.0 7.9e-60 227.3
Car04g00611 . 1 109 Orphan Transcription Factor Family AT1G06040 68.8 7.7e-39 157.5
Car16g00390 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4921 PF00643 zf-B_box 3.60E-07 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00390 Car_Chr16 FPKM 1.085327 0.0 2.371023 2.520866 0.0 0.0 0.0 4.772408 5.22394 5.77445