Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00401 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAAGTTTTCTTCCAAGTCGTCGTTTAGAGATCCGAATGGTGTAGAGGGAATTGTTCGAGTGGCCGTGTCGGAGGTCGAAGGTGCCTCCGGTCTGCCCGGCGGGACTGATGGCGACTTGATGCAGGGTGAATCTTCTTGGTCTTCTATGCTACCGGAGCTTCTCCGGGAGATTATTCAGCGGGTTGAGGCTTCTGAGGAAGGTTGGCCCAACCGCCAAAACGTTGTTTCCTGTGCTTGTGTCTGCAAACGCTGGCGGGATATTACTAAGGAGATCGCCAGAGGTACCCCTCATTCCGGGAAGATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGCGATCTTCCACATCAGTGTCTTATAAAACGGAACAAGAAGACTTCAACGTTTTACCTTTACCTTGCCCTTACACCATCTCATTTAAGGGTTATTTCCCCTACTCCAGCATTTACAGATAAGGGAAAGTTCCTCTTAGCTGCACGGAGATATAGGCATGGTGCTCATACCGAGTATATAATATCTCTTGATGCTGAAGAATTATCACAAGGAAACAATGCATATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACTATTTATGATAGCCAACCACCACACAATGGTGCAAAGCCATCGAGCAGTAAATCGAGCCGCCGCTTTGCAAGCAAGCAAATCAGCCCACAAGTGTCTGCAGGTAACTTCGAGGTTGGGCAAGTCTCCTACAAATTTAATCTTTTGAAATCAAGAGGTCCGAGGAGGATGATGTGCTCTCTAAAGTGCCCAGAATCAGAAGAATCTGTAACCAGCAAACCCTGCGAGAACTTGATGATGAAGAAATCTGAGTCTTTTTCTTCCTCATCAGGGTCGACAATCTTACGAAACAAGGCTCCAAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACAGTAGCATCTGTTAAAAACTTTCAACTTGTTGCTAGTATTGACCATAGCCAGCCAGGAGGAGGTAAAGGGGACGAAGAAACAGTTCTACTACAGTTCGGAAAGGTAGGCGACGATACCTTTACTATGGATTATAGACAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGTTGGCGTGCGAATAG 1191 47.02 MSLRRSFLSRKFSSKSSFRDPNGVEGIVRVAVSEVEGASGLPGGTDGDLMQGESSWSSMLPELLREIIQRVEASEEGWPNRQNVVSCACVCKRWRDITKEIARGTPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFYLYLALTPSHLRVISPTPAFTDKGKFLLAARRYRHGAHTEYIISLDAEELSQGNNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMMCSLKCPESEESVTSKPCENLMMKKSESFSSSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVASIDHSQPGGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2475846 2479743 - Carg11368-RA Car16g00401 163553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00401 396 Pfam Tub family 117 391 IPR000007 -
Car16g00401 396 ProSitePatterns Tub family signature 2. 381 396 IPR018066 -
Car16g00401 396 MobiDBLite consensus disorder prediction 215 235 - -
Car16g00401 396 ProSitePatterns Tub family signature 1. 323 336 IPR018066 -
Car16g00401 396 Pfam F-box domain 56 101 IPR001810 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00401 Car-Chr16:2475846 Car08g01080 Car-Chr8:7360312 2.32E-129 dispersed
Car16g00401 Car-Chr16:2475846 Car04g00544 Car-Chr4:3059573 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4923 PF01167 Tub 1.40E-101 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00401 K19600 - csv:101211968 630.943