Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00405 ATGCCGCAAGATCATCCGAAGAAGGAGTCAGGGATTAAGGGAAAGGGAAGTGGCTTTGGATTTGGTATTTGGTATTTTGAGGCCAAAGAAATCAAGTTTTTTACTGAATATGGGGATGCTAATAGGTATAAGGTTCTTGAAGTTATTGGAAGGGGAAGTTACGGAGTTGTTTGTTCTGCTATTGACATGCATACTAGAGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTTATCACGCATCGGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTACGGCATCCTGATATCGTCGACATCAAGCATATTATGCTACCACCTTCTAAAAAGGAATTTAAGGACATTTATGTGGTTTGTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAACGACGACTTGACCCGTGAACATCATCAATTCTTTCTCTACCAAATGCTACGTGCTTTGAAATTCATGCATACAGCGAATGTGTATCACAGAGACCTGAAGCCGAAGAATATACTGGCAAATGCCAATTGCAAGCTTAAAATTTGCGATTTCGGGCTTGCAAGAGTTGCTTTCAGTGACACTCCAACCACTGTATTTTGGACAGACTACGTCGCTACTAGATGGTACCGAGCTCCGGAGTTGTGTGGATCATTCTCTTCCAAGTATACTCCCGCGATCGATATTTGGAGTGTCGGCTGCATATTTGCTGAGGTTTTGTTGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACTGATCTTCTCGGGACTCCCTCATCGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCTAGGAGATATCTGTCAGAAATGAGAAGGAAATCTGCAGTGCCATTTTCGCAAAGATTTCCGAATTTGGATCCGGCAGCCGTTCGCTTACTGCAAAGGCTATTAGCATTTGATCCGAAGGATCGACCATCGGCCGTGGAGGCTCTTGCTGATCCTTACTTTAAGGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCTATCTCGAGATCGGAATTTGAGTTCGAGAGACGAAAATTAACAAAAGATGATGTACGGGAATTGTTATACCGAGAAATATTAGAATATCATCCTCAAATTCGTGATGATTATTTGAATGGAACCGATACTACAAAGCTCCTCTATCCTAGCTTTACAGGTCATTTTAAAAGCCAATTCACCTACCACAAGGAGAACGACGGTAAAAGCGCACCTGTTTTGCCTCTAGAACGTAAACACTTCTCCCTCCCACGGTCCACCGTTTGCACAAATTTGGTTTCACCCGATCGTGAGCCCGTTCGACGAAATCCCAAAGCCTGTAATAATAGCGTGGGATTACCTGATAGAAGATTTGGGAATCCATCAAAGACTCATCCTCCACCTAAAGTGCCTGTTGCTGCAAATCTAGGGCGAGTTGTCGGGCCCGTCCTTCCATGTGAGAACAGAAACATAAAAGATGTTTATTCGAAACTAACGTCGCAAATTAGAAGTTTTGATTTGTGA 1545 42.65 MPQDHPKKESGIKGKGSGFGFGIWYFEAKEIKFFTEYGDANRYKVLEVIGRGSYGVVCSAIDMHTREKVAIKRIHDIFYHASDAIRILREVKLLRLLRHPDIVDIKHIMLPPSKKEFKDIYVVCELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFSSKYTPAIDIWSVGCIFAEVLLGKPLFPGKSVAHQLDLITDLLGTPSSETIAGVRNEKARRYLSEMRRKSAVPFSQRFPNLDPAAVRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIRDDYLNGTDTTKLLYPSFTGHFKSQFTYHKENDGKSAPVLPLERKHFSLPRSTVCTNLVSPDREPVRRNPKACNNSVGLPDRRFGNPSKTHPPPKVPVAANLGRVVGPVLPCENRNIKDVYSKLTSQIRSFDL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2507627 2512294 + Carg11372-RA Car16g00405 163557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00405 514 Pfam Protein kinase domain 43 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00405 514 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707|GO:0005524|GO:0006468
Car16g00405 514 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Car16g00405 514 MobiDBLite consensus disorder prediction 443 476 - -
Car16g00405 514 ProSiteProfiles Protein kinase domain profile. 43 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00537 Car-Chr11:2904081 Car16g00405 Car-Chr16:2507627 1.51E-09 dispersed
Car16g00405 Car-Chr16:2507627 Car19g00847 Car-Chr19:8898907 0 dispersed
Car16g00405 Car-Chr16:2507627 Car04g00606 Car-Chr4:3477372 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89434 PF00069 Pkinase 1.30E-64 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00405 - K04371 csv:101213897 902.508