Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00416 ATGGCCGCGGTTGCTGAGAATTCCGGTGAGGCAGCGGCTGCCAAGAATTTTGATCCGCAGATGAAACCCAAATCACAATTTGATGCTAATAACCTCGCTGAAATGTTCAGTAATTTGAACCCTTTGGCTAAGGAGTTTTTCCCTTCCTCTTACTCTCATCATGATCGTCAAGATTTTCAATTCTATTATCAAAACAATACTCGATCGTCGGCCAAAGCCTTTCACGTCGCCGATCAACTGTTGGACGGTGATATCAATCGCAGGAGACGAAGCGACTTTAATAACCAGGGGAGAAGAAGAATGAATAACAATAGATCTGTCAGAGCTCAGCAAGAGGAAAGTATAAGGAGGACTGTCTATGTATCTGATATCGATAAGGATGTCTCTGAAGAGGAGCTCGCCAAGGTATTCAGGGAGTTTTGTGGTTATGTTAATGATTGCCGAATATGTGGCGATCCCCATTCAGTTCTTCGTTTTGCTTTTGTGGAGTTTGCTAATGAGCATAGTGCTAGAACAGCCATAGGCCTTAGCGGGACGGTGGTCGGGTCTTATCCAGTTAAGGTATTGCCTTCAAAGACTGCCATTCTTCCTGTGAATCCTACCTTTCTCCCTAAGTCAAACGACGAATGGGATATGTGTACAAGAACTATCTACTGCACAAATATTGATAAGAAGGTATCTCAGGCTGAAGTTAAGAGTTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGGGATCAGCTGCATTCGACCCGTATAGCGTTTGTCGAGTTTGCTATGGCAGAGACGGCTCTTCAAGCACTGAATTGCAGTGGCATGATCTTGGGATCTCAGCCAATCAGGGTAAGTCCTTCTAAGACACCGGTTCGGCCACGGGTTACTCGCCCGGGAAGCATGAAGCCATCTTGA 921 45.39 MAAVAENSGEAAAAKNFDPQMKPKSQFDANNLAEMFSNLNPLAKEFFPSSYSHHDRQDFQFYYQNNTRSSAKAFHVADQLLDGDINRRRRSDFNNQGRRRMNNNRSVRAQQEESIRRTVYVSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARTAIGLSGTVVGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGSQPIRVSPSKTPVRPRVTRPGSMKPS 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2573733 2577419 - Carg11383-RA Car16g00416 163568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00416 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 193 IPR000504 GO:0003723
Car16g00416 306 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 301 - -
Car16g00416 306 MobiDBLite consensus disorder prediction 285 306 - -
Car16g00416 306 Gene3D - 63 194 IPR012677 -
Car16g00416 306 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Car16g00416 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Car16g00416 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Car16g00416 306 MobiDBLite consensus disorder prediction 1 24 - -
Car16g00416 306 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 301 - -
Car16g00416 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 291 IPR000504 GO:0003723
Car16g00416 306 Gene3D - 211 287 IPR012677 -
Car16g00416 306 SUPERFAMILY RNA-binding domain, RBD 204 301 IPR035979 GO:0003676
Car16g00416 306 CDD RRM2_CID8_like 211 292 IPR034825 -
Car16g00416 306 SMART rrm1_1 216 287 IPR000504 GO:0003723
Car16g00416 306 SMART rrm1_1 118 189 IPR000504 GO:0003723
Car16g00416 306 SUPERFAMILY RNA-binding domain, RBD 101 194 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00416 - - - csv:101215100 557.755
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00600 Car16g00416 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00416 Car-Chr16:2573733 Car15g01026 Car-Chr15:8013883 2.31E-09 dispersed
Car16g00021 Car-Chr16:220404 Car16g00416 Car-Chr16:2573733 1.76E-109 transposed
Car16g00416 Car-Chr16:2573733 Car04g00600 Car-Chr4:3438485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g910 . . . . . . . Bma13g00905 Cmo16g00493 Cmo04g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00770 Blo07g00996 . Bda05g00815 Bda12g00790 . . . . . . . Cma04g00645 Cma16g00458 Car04g00600 Car16g00416 Cpe14g00386 Cpe01g00582 . . . . . . . Cla07g01001 Cam07g1077 Cec07g1149 Cco07g1127 Clacu07g1051 Cmu07g1042 Cre07g1417 . . Chy07g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00416 Car_Chr16 FPKM 3.489639 3.353658 1.280888 1.16277 41.511509 36.912216 37.207745 1.06925 1.264457 0.764647