Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00417 ATGAACAATAGACCAACTAAAGATGGAAAATCGGTTCGGAAGGGGCTGCCGGTGATTGGGAAAGTTCCGGAGTGTATTCGGGGGGTTTATGTGCGAAACGGCGCGAACCCACTTCATGAACCGGTGTCCGGTCACCACTTGTTTGATGGTGATGGGATGGTTCATGCTGTGGAGTTCACTGAGGACGGCGGCGTTAGTTATGCTTGCCGGTTTACGGAGACTCAACGGCTGGTTCAGGAACGAGCTTATGGCCGGCCGGTTTTTCCGAAAGCCATTGGAGAACTTCATGGCCACTCTGGTATAGCTCGGCTGTTGCTTTTCTATGCGAGAGGTTTATTTGGGCTGGTCGATCACAGCCATGGAATTGGAGTCGCCAACGCCGGTTTGGTTTATTTCAACGGCCAGCTTCTCGCCATGTCGGAGGATGATTTGCCTTACGAAATCAGAGTTACTCCGGCAGGGGATTTGAAAACCGTTGGCCGGTTTGATTTCGACGGCCAATTGAAATCCACAATGATAGCCCACCCAAAAATCGACCCTGTTTCCGGCGAGATGTTTGCTTTAAGCTACGACGTAATCCAAAAGCCATATTTGAAATACTTCAAATTCTCGCCGGAGGGGGAAAAGTCACCGGACGTTGAAATTCCCCTGCCTCAGCCAACGATGATGCACGATTTCGCAATTACAGAGAAATTCGTCATAATTCCCGACCAGCAGGTGGTTTTCAAGTTGCCGGAGATGATCCGCGGCGGTTCTCCGGTGATTTATGACAAAGAAAAAACCTCCCGATTTGGAGTTATGGACAAAAATGCCACCGACGCCGACGCCATTAAATGGATCGACGTTCCTGATTGCTTCTGTTTCCATCTCTGGAACGCTTGGGAAGAACCAGAAACAGAGGAAATCGTCGTAATTGGGTCGTGCATGACGCCGCCGGACTCCATTTTCAACGAATGTGAAGAGAATTTGAACTCCATCTTATCGGAAATTCGTCTGAATCTCTCCACGGGTAAATCGACTCGTCGGCCTATCATCGCCGAAACAGAGCAAGTGAACTTAGAGGCCGGAATGGTGAACCGAAATCGACTAGGGAGAAAAACCCAATTCGCTTATGTTGCTCTAGCAGAGCCATGGCCGAAAGTTTCCGGTTTCGTGAAGGTCGATCTCTTCACCGGAGAATCCAGAAAGTATCTCTACGGCGAGCAGAGGTACGGCGGCGAGCCTCTGTTTCTGCCTAGAGAAGGTGCAGAGGCGGAGGACGACGGCCACATCTTGACGTTCGTTCACGACGAGAAGGAATGGAAATCAGAGCTTCAGATCGTTAACGCCATGACTTTGGAGCTTGAAGCTACTGTGAAGCTTCCTTCTCGAGTTCCTTATGGCTTCCATGGAACATTCATAAGCTCCAATGATTTACAGAAGCAGAAACAGTAA 1434 49.58 MNNRPTKDGKSVRKGLPVIGKVPECIRGVYVRNGANPLHEPVSGHHLFDGDGMVHAVEFTEDGGVSYACRFTETQRLVQERAYGRPVFPKAIGELHGHSGIARLLLFYARGLFGLVDHSHGIGVANAGLVYFNGQLLAMSEDDLPYEIRVTPAGDLKTVGRFDFDGQLKSTMIAHPKIDPVSGEMFALSYDVIQKPYLKYFKFSPEGEKSPDVEIPLPQPTMMHDFAITEKFVIIPDQQVVFKLPEMIRGGSPVIYDKEKTSRFGVMDKNATDADAIKWIDVPDCFCFHLWNAWEEPETEEIVVIGSCMTPPDSIFNECEENLNSILSEIRLNLSTGKSTRRPIIAETEQVNLEAGMVNRNRLGRKTQFAYVALAEPWPKVSGFVKVDLFTGESRKYLYGEQRYGGEPLFLPREGAEAEDDGHILTFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFISSNDLQKQKQ 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2589729 2591670 + Carg11384-RA Car16g00417 163569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00417 477 Pfam Retinal pigment epithelial membrane protein 16 467 IPR004294 GO:0016702
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00417 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - csv:101219505 895.575
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00599 Car16g00417 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00537 Car-Chr5:3117390 Car16g00417 Car-Chr16:2589729 2.51E-22 dispersed
Car07g00090 Car-Chr7:575442 Car16g00417 Car-Chr16:2589729 0 dispersed
Car12g00236 Car-Chr12:1574995 Car16g00417 Car-Chr16:2589729 3.96E-17 dispersed
Car13g00419 Car-Chr13:6685631 Car16g00417 Car-Chr16:2589729 0 dispersed
Car16g00417 Car-Chr16:2589729 Car17g00102 Car-Chr17:598620 0 dispersed
Car16g00417 Car-Chr16:2589729 Car04g00566 Car-Chr4:3214088 6.23E-91 wgd
Car16g00417 Car-Chr16:2589729 Car04g00599 Car-Chr4:3428565 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g944 . . . . Bpe09g00281 . . . . Cmo04g00691 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00797 Bda12g00789 . Bpe03g00857 . . . . . . Cma16g00460 Car04g00599 Car16g00417 Cpe14g00387 Cpe01g00581 . . . . . . . Cla07g01003 Cam07g1078 Cec07g1150 Cco07g1128 Clacu07g1053 Cmu07g1043 Cre07g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000637 4 3 3 4 4 3 5 3 3 2 3 3 5 3 3 5 3 5 6 3 3 3 3 3 3 3 3 3 3 1 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00417 Car_Chr16 FPKM 9.517314 11.355145 10.386497 10.708828 7.875878 6.486597 8.413723 9.364334 9.329999 9.443557