Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00425 ATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTATGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACCACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAA 417 52.76 MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2656510 2658451 + Carg11392-RA Car16g00425 163577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00425 138 Pfam Photosystem II 10 kDa polypeptide PsbR 40 137 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Car16g00425 138 PANTHER BNAANNG27100D PROTEIN 1 138 - -
Car16g00425 138 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 138 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00425 K03541 psbR; photosystem II 10kDa protein - csv:101215781 250.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00605 Car16g00425 CST
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004437 0 2 1 0 1 1 1 1 1 1 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00425 Car_Chr16 FPKM 0.0 0.0 0.128841 0.0 0.890022 0.940587 0.592056 0.053975 0.091484 0.019613