Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00445 ATGACTCGTAATAACGTCCTCATTAACATTGCCCTCTCTTCTCTCGTTCCTCTTTTTCTTGCTTTGCTCCTCGTCGTCATTCCTACCCCTCCTTTCCTCTCCGTTCTCGACGACTCCCTTAGCTGCCACCACCACCATCATAAATCCTCAGCTGATGAAGAAGACCGAGCGAGTATCGGTTCCATTTGTGACACCTTCCCGACCGCCCTTCTCCCACCAGAAACTGTCAACACTTCTGTCTTATGCGTTGACCAAAATGGATGCTGCAACTTCACTACTGTACAGGCAGCTGTGGATGCTGTGTTGAATATGAGCTCCAAACGAAGCTTAATATGGATCAACACTGGAATCTACTTTGAGAAGGTGATGGTTCCGAGATCGAAACCGAACGTGACATTTCAAGGACAAGGCTACACAACCACGGCTATTGTTTGGAACGACACCGCTAATTCTTCGCATGGCACCTTTTACAGCGGCTCCGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGTCATCGGAGCACAGGCTGTGGCGATTCGGATCGGCGGAGACCAGGCGGCGTTTTGGAACTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGATGACCGCGGTCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGAAATGGAAGATCTTACTACGAGAGTTGCCAGATGATTTCGATGGCGAATCCAGTTCCGCAAGGATCAAAGTTCGTGAACGGAGCCGTGACGGCGCACGGCAGAGCCTCCGCAGACGAGAACTCTGGATTTGCTTTTGTTAATTGCAGCATCGGTGGAACCGGGCGAGTGTGGCTCGGTCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGTCGGAGGGATGGAATGACTTTAATGACCCCGCAAGGGACCAGACGATATTCTACGGGGAGTACAACTGCAGTGGAGCAGGAGCCAACATGAGCGCAAGGGCTCCGTATGTTCAGAGGCTCAATGATACTCAAGCTTCCCCTTTCCTCAACCTCTCCTTCATTGACGCAGACCAATGGCTGCAACCCTATTAA 1146 51.31 MTRNNVLINIALSSLVPLFLALLLVVIPTPPFLSVLDDSLSCHHHHHKSSADEEDRASIGSICDTFPTALLPPETVNTSVLCVDQNGCCNFTTVQAAVDAVLNMSSKRSLIWINTGIYFEKVMVPRSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGVIGAQAVAIRIGGDQAAFWNCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSYYESCQMISMANPVPQGSKFVNGAVTAHGRASADENSGFAFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIASEGWNDFNDPARDQTIFYGEYNCSGAGANMSARAPYVQRLNDTQASPFLNLSFIDADQWLQPY 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2820554 2822637 + Carg11412-RA Car16g00445 163597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00445 381 ProSitePatterns Pectinesterase signature 2. 229 238 IPR033131 -
Car16g00445 381 Pfam Pectinesterase 82 374 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00739 Car-Chr10:3889297 Car16g00445 Car-Chr16:2820554 1.90E-86 dispersed
Car14g00221 Car-Chr14:1045963 Car16g00445 Car-Chr16:2820554 3.30E-132 dispersed
Car15g01027 Car-Chr15:8018790 Car16g00445 Car-Chr16:2820554 1.00E-87 dispersed
Car16g00445 Car-Chr16:2820554 Car10g00608 Car-Chr10:3096296 2.30E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00445 - - bhj:120090174 671.774