Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00470 ATGACCGAGCCCGATTCCAATCACCCATCCACCCTTTTCCCCAAATCCACCCACCGCTCCGCCCCCGACGACCGGACCCAGCTCATGGATTTCGATCTCGACTTGGACTTCCCTTGGTCCTTGGATCAAATCCCTTCATTCGCTTCCAACCCCATGTCCCCTTTTCTCGTTTCCACCTCCGATCATCTCGGCTCCCCTCTCTGGGCCTTCTCCGAACCCGACGACGACGACGATTCCAAGTTTCCTGCCTCTACCTGCTCTCTGAGAGCAGGTACTTCCAATTCCAATTCTGTACCACAAAAGCCGTCCGAGAATCACAAGTTCAAAATTCTTCCAGTTCAATCTTCATCATGGGGACTAATCCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGATACATTAAGGAATCCTCCGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGCTTGTACTTTCAACTTCTGGCCAACCTTTCGTCCTTGATTCACAGAGCAATGGACTTCATCAGTATAGGATGGCCTCTTTGACTTTTATGTTTTCTTTGGAGCCCGACCAGGATGGATATCTTGGTCTCCCTGGTCGTGTTTTCCAGCAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTACCCTCGACTTAGTCATGCTCTTCACTACAATGTTCAAGGAACTTTGGCTTTGCCTGTTTTCGACCCGTCCGGGCAGTCTTGTCTCGGTGTTCTTGAGCTTATCATGACCTCACCAAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTGAGGCTGTGAATCTAAAAAGTTCAGAGATTTTGGATCATCCAAATAATCAGATACATACTTCGCAATGCTTTTCAAACCAGATTTGCAACGAAGGTCGACAGAATGCGCTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAATGTGCTCGCTTACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATTTGTATGTCTGCAACTGAAGTAGCGTCGTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACATCATTTACGAAAGGGTCAAGGTGTTTCTGGGCGAGCGTTTTTATCCCACAGCTCATGTTTTTGTGGAGATATCACTCAATTCTCCAAGACTGAGTACCCTTTGGTACATTATGCACTCATGTTTGGATTAAAGAGCTGTTTTTCGATCTGTTTACGAAGCACGTTTACTGGAGACGATGAGTACATTCTAGAGTTTTTCCTGCCACCGAGCATTGTCGATTATCAGGAACAAAAGACTTTGTTGGGTGCATTGATGGCAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTCAAGGACGAGGAAGGACTTGTTGAGATCATTCAAGTGTCGAGAAATGGAGGATTCGAGTCGAGAATTGAATATATTCAAATTCCTCGACCTATGGATTTGCCTCCTCACTCTGATGCCATGCCAAATGCAGGAGAGGTAGTTGCATTAGAAAAGCTGCAGCAGCAATCTTTAATGGTTCATGATACTCCAAAGGACGAAAACAATAGCGCTCGGGATGACGAAAGCCACAACCCTGCTCCTTGTCCACAGAGTAAGGAAGTAAAAAAGACGTCGGAAAGAAAGCGTGGAAAAGCTGAGAAATCGATTAGTCTTGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCTACGACAATGAAGCGTATCTGTAGGCAACACGGGATTTCACGGTGGCCATCTCGGAAAATCAACAAGGTCAATCGTTCACTTTCAAAGCTAAAGCGCGTAATTGAATCGGTTCAAGGGGCCGAAGGAGCGTTCGGGATATCATCTCTAGCTACGAGTCCTCTTCCTGTTACTGTTAGTTCGAGTTCTCATCCTTTAACTCCGGAAGGGTCTAATCAGCAAAACTTTGTTGCTTCCCAACCATCTGATCCACAACATAAAGAAACGAACACCTCGGAAGGACAGACAATCGACACATGGGCTAGATTGGAAGATCAATTACATAGGGGAGTGTTGAGTCCAGAAGAACCGATCCACGAACAAAACGGATATCTGCCGAGGTTTGGAAATGGTTTGAGCAATTATAGAACGGGGAGTGGATCACGGGAAGAGAGCGTCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGACAGTGGTGTAGCTAATAATCCCATTTCTATTCCTCAGCAGCAAGAACAATGCGTTAGAAGAGAATCTCCTGAAGTAGCATTCCATCCGATCGATAAACTGAACATATCAGTACCAGCTCGTCCGATCCCGGATACGCTCGTAATGGTTGAGCCTACTGAGGAAGCATTTGGAGGAATGCTGATTGCGGATGCAGGTAGTTCGAAGGACTTACGAAATCTTTGCGCTTCGGTGGCCGATGCTGTTCTCGACGAGCAAGTACCTGAGTTTTGTTGGTCCAACCCTCCTGATATAGCTCTGAGACAACCTATGGAGTCTGTTTGTCACACAGTCCCTTATATGTCAGCAGGGCAAGAAGCAAGAAGGATGACTATCAAGGCGAGTTATAAGGAAGATATCATTCGGTTTCGAATTCCGTTGAGTTCGGGTATTGTGGAGTTAAGAGAAGAAGTGGCAAAGAGATTGAAAATGGAGGTGGGTACGTTCGATATCAAATACATGGACGATGATCGAGAATGGGTTCTTATGGCGTGCGATGCAGACCTGCAAGAGTGCGTAGAGATATCGAAGTCATCAGGTAGCAATATAATAAGATTGTTGGTTCATGATATAAGTGTGAATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGA 3018 45.92 MTEPDSNHPSTLFPKSTHRSAPDDRTQLMDFDLDLDFPWSLDQIPSFASNPMSPFLVSTSDHLGSPLWAFSEPDDDDDSKFPASTCSLRAGTSNSNSVPQKPSENHKFKILPVQSSSWGLIPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKLVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLEPDQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQIHTSQCFSNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLRKGQGVSGRAFLSHSSCFCGDITQFSKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKQHFYTLKVASGINLKDEEGLVEIIQVSRNGGFESRIEYIQIPRPMDLPPHSDAMPNAGEVVALEKLQQQSLMVHDTPKDENNSARDDESHNPAPCPQSKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDPQHKETNTSEGQTIDTWARLEDQLHRGVLSPEEPIHEQNGYLPRFGNGLSNYRTGSGSREESVGTPTSHGSCQGSPANDSGVANNPISIPQQQEQCVRRESPEVAFHPIDKLNISVPARPIPDTLVMVEPTEEAFGGMLIADAGSSKDLRNLCASVADAVLDEQVPEFCWSNPPDIALRQPMESVCHTVPYMSAGQEARRMTIKASYKEDIIRFRIPLSSGIVELREEVAKRLKMEVGTFDIKYMDDDREWVLMACDADLQECVEISKSSGSNIIRLLVHDISVNLGSSCESTGE 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2984946 2988699 - Carg11438-RA Car16g00470 163622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00470 1005 MobiDBLite consensus disorder prediction 85 103 - -
Car16g00470 1005 MobiDBLite consensus disorder prediction 744 797 - -
Car16g00470 1005 MobiDBLite consensus disorder prediction 1 25 - -
Car16g00470 1005 ProSiteProfiles PB1 domain profile. 910 992 IPR000270 GO:0005515
Car16g00470 1005 MobiDBLite consensus disorder prediction 684 724 - -
Car16g00470 1005 Pfam RWP-RK domain 603 651 IPR003035 -
Car16g00470 1005 Pfam PB1 domain 911 991 IPR000270 GO:0005515
Car16g00470 1005 MobiDBLite consensus disorder prediction 564 601 - -
Car16g00470 1005 MobiDBLite consensus disorder prediction 1 17 - -
Car16g00470 1005 ProSiteProfiles RWP-RK domain profile. 590 671 IPR003035 -
Car16g00470 1005 MobiDBLite consensus disorder prediction 759 797 - -
Car16g00470 1005 MobiDBLite consensus disorder prediction 68 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00470 - - - cmax:111483346 2006.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00046 Car-Chr9:230493 Car16g00470 Car-Chr16:2984946 1.60E-13 dispersed
Car10g00181 Car-Chr10:882053 Car16g00470 Car-Chr16:2984946 1.89E-09 dispersed
Car12g00604 Car-Chr12:4022894 Car16g00470 Car-Chr16:2984946 8.48E-11 dispersed
Car14g01252 Car-Chr14:10795346 Car16g00470 Car-Chr16:2984946 3.95E-18 dispersed
Car16g00470 Car-Chr16:2984946 Car03g00579 Car-Chr3:5511680 3.49E-07 dispersed
Car16g00470 Car-Chr16:2984946 Car04g00546 Car-Chr4:3077219 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00546 . 169 965 NLP Transcription Factor Family AT1G64530 51.2 2.1e-209 726.1
Car16g00470 . 266 1005 NLP Transcription Factor Family AT4G24020 54.2 2.1e-201 699.5
Car04g00546 . 248 965 NLP Transcription Factor Family AT4G24020 53.5 2.6e-196 682.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4928 PF00564 PB1 4.90E-18 CL0072 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00470 Car_Chr16 FPKM 0.0 0.659367 0.0 0.0 1.567546 0.0 1.307943 0.0 0.0 0.0