Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00472 ATGGCTAATCGGGGAGGAGGGTCGTTTTCGTCTCAAGGTGGGGGAGGAGATGGACTTTACACCGAGCTTTGGAAGGCATCGGCTGGGCCTCTTGTGGAAGTTCCTCGAGTTAATGACAAGGTTTTCTACTTCCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCATGAACTGAATCGGAAACATCCTTTGTTTAAACTTTCCTCCAAAATTCTCTGCCGTGTTGTTGATGTTCGCCTGCTGGCTGAGCAGGAAACAGATGAGGTTTATGCACAGATAACTTTAATGCCTGATTCAAATCAAGAGGAACCTACTAATCCTGATCCTTCGCCACCGGAGTGTCGTAAACCGAAAGTCCATTCGTTTTGCAAGGTCTTGACTGCTTCTGATACTAGCACCCATGGAGGATTCTCCGTGCTTCGTAAACACGCCACGGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCAACTCAAGAACTTGTAGCCAAAGATCTTCATGGTAACGAGTGGCGATTCAAGCATATCTTTAGGGGTCAACCACGAAGGCATTTGCTAACGACGGGATGGAGCACGTTTGTTACTTCGAAAAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGAGGGGAAAATGGGGATTTGCGAGTCGGAGTGAGGCGTCTTGCTCGCCAACAAACCAGCATGCCTTCATCTGTGATTTCGAGTGACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCACGCTGTGTCAACTCTAACTCGCTTCGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATCGAAGCAATGAACAGGAAGTTCTTAGTTGGGATGAGATTCAAGATGAGATTCGAGGGAGAGGAGTCTCCCGAGAGAAGGTTTTCGGGTACCATTGTCGGAGTTGACGACATATCTCCTCACTGGCCCAATTCGAAATGGCGATCGCTAAGAATTCAATGGGATGAACTTGCATCTATTCCTCGACCTGATAGAGTTTCGCCATGGGAGATTGAACCTTTTGTGGCGCCTACGTCCCCGAGCATTCCGCAATCAGTTTCGGTAAAGAATAAAAGGCTTCGGCCTCCACTTGACATTCCAGATTCTGATAATTCAACCGTAACAACTCTACGACATCCAGGATCAACTCAATCACATGACGATAGAACACAGCATAGCGTTGCTGCTGCTGAAATGAAACGATTTGAAAATCACGCAACGTGGAATTACAAGCAAACGGATGTTAGCAGCATTGGGAATTCTGTATCAAGGACCCCGAAGGAGGGCTCTTGGTTAGCTTCCCCGAATGGGAGTGTTTCGCAGCATCGATTACAGAATTTGACAGATGACCGAAACAGCAATTATGTTTGGTCAACCGTCTTCTCGGGAGCGCCAGCAGCACAGTCGACATGTCCAGCTCCACACCCATCTAATCCAAAGAGCAGCGACCAAGTTAACGACCTTGGGGAAAAGGGGAGGAAAACTGAGGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGATATCATCGGTCATTCCAAGAGCCCAGTTCCACCCGAAATGGCTGCTGATCAACCGATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAATTCGGACCAGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTGTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAGCAGCTCGACCAACAGCCGAAGTCGGACCAAGGTTCAAATGCAGGGGATGGCTGTTGGACGTGCGGTGGACCTTACGATGTTGGAAGGGTATGGCCAACTCATCGACGAACTGGAAAAGATGTTCGATATCAAGGGAGAACTTCACCCACGTGACAAGTGGGAGATTGTCTTCACAGACGACGAAGGAGATACGATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCGAGTCAGGATGTGAAGATGATGAGTTCGGTTAGCAACCTTACAATGTCTGCAATGGAATGCGATGGGACGGTAATAACCTCGGAGTCGGCCGACAGCTGA 2085 48.01 MANRGGGSFSSQGGGGDGLYTELWKASAGPLVEVPRVNDKVFYFPQGHMEQLEASTNHELNRKHPLFKLSSKILCRVVDVRLLAEQETDEVYAQITLMPDSNQEEPTNPDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGNEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGDLRVGVRRLARQQTSMPSSVISSDSMHLGVLATASHAVSTLTRFVVYYKPRASQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWRSLRIQWDELASIPRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRLRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQHSVAAAEMKRFENHATWNYKQTDVSSIGNSVSRTPKEGSWLASPNGSVSQHRLQNLTDDRNSNYVWSTVFSGAPAAQSTCPAPHPSNPKSSDQVNDLGEKGRKTEVAPSCRLFGIDIIGHSKSPVPPEMAADQPISAPNEITDAEQNSDQPKASKERKLGLLQVPPKEIQHKQSSSTNSRSRTKVQMQGMAVGRAVDLTMLEGYGQLIDELEKMFDIKGELHPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMMSSVSNLTMSAMECDGTVITSESADS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3011343 3015046 - Carg11440-RA Car16g00472 163624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00472 694 Pfam AUX/IAA family 628 666 IPR033389 -
Car16g00472 694 Pfam AUX/IAA family 560 618 IPR033389 -
Car16g00472 694 MobiDBLite consensus disorder prediction 476 507 - -
Car16g00472 694 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Car16g00472 694 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Car16g00472 694 MobiDBLite consensus disorder prediction 429 450 - -
Car16g00472 694 Pfam Auxin response factor 250 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car16g00472 694 MobiDBLite consensus disorder prediction 476 496 - -
Car16g00472 694 MobiDBLite consensus disorder prediction 98 118 - -
Car16g00472 694 MobiDBLite consensus disorder prediction 563 587 - -
Car16g00472 694 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Car16g00472 694 MobiDBLite consensus disorder prediction 570 587 - -
Car16g00472 694 MobiDBLite consensus disorder prediction 358 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00671 Car-Chr2:5010194 Car16g00472 Car-Chr16:3011343 0 dispersed
Car04g01924 Car-Chr4:11510297 Car16g00472 Car-Chr16:3011343 0 dispersed
Car15g01164 Car-Chr15:9141928 Car16g00472 Car-Chr16:3011343 0 dispersed
Car16g00472 Car-Chr16:3011343 Car13g00401 Car-Chr13:6546260 7.67E-11 dispersed
Car04g02657 Car-Chr4:20702822 Car16g00472 Car-Chr16:3011343 1.52E-23 transposed
Car08g00100 Car-Chr8:581618 Car16g00472 Car-Chr16:3011343 0 transposed
Car10g00012 Car-Chr10:62700 Car16g00472 Car-Chr16:3011343 5.74E-25 transposed
Car16g00472 Car-Chr16:3011343 Car04g00622 Car-Chr4:3574810 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4929 PF02362 B3 3.50E-22 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00472 K14486 - csv:101213942 1152.89