Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00537 ATGGATTTTGGTTCATCTTCAAGATTTCATCATCAACATCAAGAAATAATGGAAGAGTCTTCTAATTCTGGTGTTTATATAGAGAAAGAGCATATGTTCGACAAGGTTGTGACTCCAAGCGATGTGGGAAAATTGAATCGTTTAGTGATCCCTAAACAACATGCTGAAAAGTTCTTCCCTTTGGATTCTTCATCAACCGAAAAGGGTCTTCTTTTAAGCTTTGAAGATCGCTGTGGTAAGCTATGGCGGTTTCGTTACTCTTACTGGACTAGTAGCCAAAGCTATGTGATGACTAAAGGCTGGAGCCGCTTTGTTAAAGAGAAACGACTTGATGCTGGTGATATTGTCTCCTTTCAAAGAGGGGTTTGTAAAGATCGGTTTTTTATTGATTGGCGGCGCCGCCCTCCTCACACGGCGGTGGAGACAGCTTTTCATCACCATGGTGGTGGTGGTTGTGGCGGTGGTGGTGGTGGTTATGGTGGTGGTGGACAATTTCCGCCTTACCAATTTCAGCTTCACGGCCAGTGGAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGCCTTCCACTTGCAGCAGAATAATAGTGTTCATAATAATGTCAGCCTATTTCATACCACCTATAATCATCAACCGATCGGAGGCGGTGGTTGTGACGGTGGGGCGTCGGTTTTTTACGAATTGAGATCCCCGGCAGCACTGCCGGGAGTCGACGACGGTGGCGGTCATGGAATTGGGAAAGCTGCTGCAGCTAAGACATTGAGGCTATTTGGTGTCAATATGGAATGTGTAGTATCTGAAGATTCCGATGACGACGAGGGCGACAAAGTAACAACCTCGACTTCGACAACGTTGTCATCTCAATTCTGTGTTTATAACGGAATGCCGATGTCGATGTCGATGCCGACGAGCAATCCCGACGTACCGATCACCGACTTTTTCGAAAAAGGGAAGTCTTTTTGGGTATCTAAATGGCAGTGGAAGAAGCAAGTTCTTGTGTTCTTTCTCATAAATTGCCTCACAAGAAGCCAATTTGGTGTTGTTTATAGGTTTTGA 1062 45.48 MDFGSSSRFHHQHQEIMEESSNSGVYIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKFFPLDSSSTEKGLLLSFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVCKDRFFIDWRRRPPHTAVETAFHHHGGGGCGGGGGGYGGGGQFPPYQFQLHGQWNPVATPLSLHRDHAFHLQQNNSVHNNVSLFHTTYNHQPIGGGGCDGGASVFYELRSPAALPGVDDGGGHGIGKAAAAKTLRLFGVNMECVVSEDSDDDEGDKVTTSTSTTLSSQFCVYNGMPMSMSMPTSNPDVPITDFFEKGKSFWVSKWQWKKQVLVFFLINCLTRSQFGVVYRF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3397351 3400341 - Carg22199-RA Car16g00537 163689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00537 353 Pfam B3 DNA binding domain 33 134 IPR003340 GO:0003677
Car16g00537 353 ProSiteProfiles B3 DNA-binding domain profile. 33 135 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00707 Car-Chr2:5225614 Car16g00537 Car-Chr16:3397351 1.63E-64 dispersed
Car14g00304 Car-Chr14:1460244 Car16g00537 Car-Chr16:3397351 1.10E-47 dispersed
Car17g00502 Car-Chr17:4446191 Car16g00537 Car-Chr16:3397351 6.95E-67 transposed
Car16g00537 Car-Chr16:3397351 Car04g00683 Car-Chr4:3966772 1.90E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4937 PF02362 B3 6.10E-27 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00537 - - bhj:120090999 362.459