Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00545 ATGGAGGCCATGCCCAATCTAATGCTCTTCCTCTTCCTCTTCCTTTCAATCGTCTCGACTTTCGGCGCTGAATCTGATTATGTTCGTCCTCAGCCCCGCCAGACTCTGCATTTTCCATTGAATCAGAAATCATCTTCTCAACCTCGGCAGGTGCATATCTCTCTAGCAGGGGACAAGCATATGAGGATCACATGGATTACTAATGATCATTCTGCTCCCTCTTTTGTTGAATATGGGACACTACCTGGAAACTATACTTCTGTTTCTCAAGGAGAGAGCACCTCATACACTTACATTTTGTACAAGTCAGGAAAGATACACCACGCAGTAATTGGGCCTCTAGAGGCCGGCACAGTTTATTACTACCGATGTGGTGGGGAAGGTTCTGAGTTCCAGCTGAAAACTCCTCCTTCCCAGTTGCCAATCACTTTTTCAGTGGCAGGGGATCTGGGCCAAACTGGATGGACCAAATCAACATTAGACCACATTAATCTGTGCAAATATGATGTGCTTCTACTTCCAGGTGACCTATCCTATGCCGATTACTTGCAGCATCGGTGGGACACGTTCGGTGAGCTCGTGGAGCCTCTTGCGAGTACGAGACCGTGGATGGTAACTCAAGGGAACCATGAAAAGGAGAGCATAATTCTATTTAAGTCTCCATTTGACTCGTATGATGCAAGATGGAAGATGCCATTTGAGGAGAGTGGATCGAGTTCGAATCTCTATTATTCTTTTGAAGTTGCTGGAACTCATGTGATTATGCTTGGATCGTACACTGATTATGATGAATCCTCAGATCAATATGCATGGTTGAAGGCTGATCTTGCAAAGGTGAACAAGGAAAGAACACCCTGGCTAGTAGTGTTATTCCATGTGCCATGGTACAACAGTAATAAAGCTCATCAAGGTGAAGGTGCAAGCATGATGGCAGCCATGGAGCCATTGTTATATGCAGCTGGTGCAGACATAGTAATTTGTGGCCATGTCCATGCTTACGAACGCTCGAAACGTGTGTATGCTGGAAAATCTGATCCTTGTGGTGCTGTGCACATAACTATTGGCGATGGAGGAAACCGAGAAGGTTTAGCTCACAGGTACATCCCACAGCCTGAATGGTCGGTGTTTCGAGAAGCTAGTTTCGGGCATGGGGAGCTGAAGATAGTGAATTCAAGTCATGCATTTTGGAGTTGGCATAGAAATGACGATGATGAACCAGTGAAGTCTGATCAAGTATGGATAACCTCATTGGCAGCCTCTGGTTGTGCCGCTGAGAAGAACCATCCACCGAAGAAATTCACATGA 1305 45.75 MEAMPNLMLFLFLFLSIVSTFGAESDYVRPQPRQTLHFPLNQKSSSQPRQVHISLAGDKHMRITWITNDHSAPSFVEYGTLPGNYTSVSQGESTSYTYILYKSGKIHHAVIGPLEAGTVYYYRCGGEGSEFQLKTPPSQLPITFSVAGDLGQTGWTKSTLDHINLCKYDVLLLPGDLSYADYLQHRWDTFGELVEPLASTRPWMVTQGNHEKESIILFKSPFDSYDARWKMPFEESGSSSNLYYSFEVAGTHVIMLGSYTDYDESSDQYAWLKADLAKVNKERTPWLVVLFHVPWYNSNKAHQGEGASMMAAMEPLLYAAGADIVICGHVHAYERSKRVYAGKSDPCGAVHITIGDGGNREGLAHRYIPQPEWSVFREASFGHGELKIVNSSHAFWSWHRNDDDEPVKSDQVWITSLAASGCAAEKNHPPKKFT 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3454928 3458534 + Carg05630-RA Car16g00545 163697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00545 434 Pfam Calcineurin-like phosphoesterase 146 333 IPR004843 GO:0016787
Car16g00545 434 Pfam Purple acid Phosphatase, N-terminal domain 48 129 IPR015914 GO:0003993|GO:0046872
Car16g00545 434 Pfam Iron/zinc purple acid phosphatase-like protein C 349 404 IPR025733 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00545 K22390 ACP7; acid phosphatase type 7 - csv:101213952 792.341
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00861 Car16g00545 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01049 Car-Chr3:8582872 Car16g00545 Car-Chr16:3454928 3.69E-176 dispersed
Car07g00845 Car-Chr7:4473618 Car16g00545 Car-Chr16:3454928 5.31E-176 dispersed
Car12g00099 Car-Chr12:531938 Car16g00545 Car-Chr16:3454928 7.83E-21 transposed
Car16g00545 Car-Chr16:3454928 Car09g00861 Car-Chr9:5268646 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g498 Blo03g00564 . . . . . . . . . Cma01g01134 Cma09g00948 . Car09g00861 . Cpe06g00763 Cpe02g00767 . . . . . . . . . . . . . . . . . . Lsi04g01205 . . . . . . . Bpe11g00545 . . Bma14g00341 . Cmo01g01185 Cmo09g00946 . . . Car16g00545 . . . . . . . . . Cla05g01492 Cam05g1608 . Cco05g1637 Clacu05g1588 Cmu05g1491 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008020 0 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00545 Car_Chr16 FPKM 8.461588 8.730676 12.024311 13.459917 10.446712 7.009162 10.728595 22.881866 24.975231 26.792791