Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00556 ATTTACTGCAAGAAATTCAAGGTTCAAGGGATTGTGAAGATGGACAACAATTACCCACAATACAATGAAGGTGCTGGCTCTTCTCACACATCCAACTCTCCTCAATGTGCCTCAAACTTTAACATCTTCGATCAATCAGCATCAAACTCAAACTCGAATGTAAAAGGTAACGAGCTCCATAGAGCGAGCGACCTTCTGATGGCGGTGTCGGTGTGCACGGAGGCAAACTTTTCGAGAATTGCCGACCTGGCCGACACGGCTATGGACGAGCTCATAAAAGCAGCTCTTGATGGAGATCCTATATGGATGCCCCAACAAAATGAAGAAGCTGAATCTTACTATACATTGTTGGATATAATGAAAATGGTTGAGGTTGGAGAGCCTCCTTCTTCCAGCCTTCTTGACTTCGATCTTTTCAACACCAAATCCGACACTGAATCCAACATCAACAACAACACAAATTTGGGCTTTAAAGACAATCCACAACAACAACAACAACACTATCTTCAAACTGAGTTTTCAAGACAAACTGAATTTGTCAAAATGGATCCACTCAGCATTGTTGGGTTTTTGATGGATTTGGAACAATGGTCACTTGTCTTCTCCGACATTGTTTCAAGAGCAGCAATTCTTCAAATGTGGTCATCAATGGGACCGGGAGGGACTTACGATGGAACTTTGCAAGTGATGACAGCTGAGTTTCAGCTCCGCCTCACCACTTGTAGAGACAAGAGAGAGCTACTTTGGGAGATCATGTGGGTTGAGCATGTGGAAGTTGACAACAGATGTGTTCAACCAATGTTCCAACCATATATCAACTCTGGTTTGGCCTTTGGTGCAAAGAGATGGGTTGCTTCTTTGGTTAGACACTGCATTTGGCTAACTACTTTAGAGGCCAAGAGCACTTCAACAATCAATGGGGATCCAGGGCTCGTTAGACATAAAAGTGAAAGTCCGGGAACCAATAAGACACAAGTTTCAATACTACAAGCTGGAAGGCTTAGTGTGTTGAAGTTGGCTGAGAGAATGACAAGGACCTTTTATAATGTTGTGAGTGGTTCTAAAGAAAATCCATGGATGAAAATTCCCATTCCTGGACCTCATGACATTAGGGTTATGACCCAGAAAGCCAAAGAGAATGATCCTGGACGTCCTCCGTGTACATCTGTGATCTTCGCTACTTCAGCTCAAGTTCCGAACAATCCGAATGAAGTTTTCCAGTTCCTTCGTCATGAGAAGTCTCGAAACAAGTGGGACATCCTTTCATTTGGTTACGTCATCACGGAGCTTGCCTGCATTATCAATGGAAACGACTCGAGAAACCGGGTGTCGATAATTCAAGTGAATTCTTCGCCGAGAAAAGTCGAGATCTTCTACCTGCAAGAGAGTTACTTCGACGCAACGGGATCTTATATAGTCTATGCACCTGTTGACCTCTTTGCCATGTCGATACTCTTACGTGGAGGAAACCCAGATAATGTGGCTATCTTGTCTTCTGGTTTTGTTGTACTTCCAGATAACCTGAAAATGAATGGACAGGAAGTTGAAGCTGATGGTAGCATCGTGACAGTGGCCCTCAACATCGTTGATCATTCAATTACTGAAAGGATCCCATTTGATTCAATGGTTTCCATGCATAGGATTATGAATGAAACTGTAGCCTCAATCAAACAGGCTTTCCAAGTACAACAATTTTAA 1698 42.99 IYCKKFKVQGIVKMDNNYPQYNEGAGSSHTSNSPQCASNFNIFDQSASNSNSNVKGNELHRASDLLMAVSVCTEANFSRIADLADTAMDELIKAALDGDPIWMPQQNEEAESYYTLLDIMKMVEVGEPPSSSLLDFDLFNTKSDTESNINNNTNLGFKDNPQQQQQHYLQTEFSRQTEFVKMDPLSIVGFLMDLEQWSLVFSDIVSRAAILQMWSSMGPGGTYDGTLQVMTAEFQLRLTTCRDKRELLWEIMWVEHVEVDNRCVQPMFQPYINSGLAFGAKRWVASLVRHCIWLTTLEAKSTSTINGDPGLVRHKSESPGTNKTQVSILQAGRLSVLKLAERMTRTFYNVVSGSKENPWMKIPIPGPHDIRVMTQKAKENDPGRPPCTSVIFATSAQVPNNPNEVFQFLRHEKSRNKWDILSFGYVITELACIINGNDSRNRVSIIQVNSSPRKVEIFYLQESYFDATGSYIVYAPVDLFAMSILLRGGNPDNVAILSSGFVVLPDNLKMNGQEVEADGSIVTVALNIVDHSITERIPFDSMVSMHRIMNETVASIKQAFQVQQF 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3518734 3524542 - Carg05641-RA Car16g00556 163708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00556 565 ProSiteProfiles START domain profile. 73 212 IPR002913 GO:0008289
Car16g00556 565 Pfam START domain 251 291 IPR002913 GO:0008289
Car16g00556 565 ProSiteProfiles START domain profile. 250 296 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00556 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101212560 666.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00556 Car-Chr16:3518734 Car19g00719 Car-Chr19:8221874 3.79E-92 dispersed
Car16g00556 Car-Chr16:3518734 Car02g00137 Car-Chr2:798512 1.72E-87 wgd
Car16g00556 Car-Chr16:3518734 Car03g00472 Car-Chr3:5043138 2.44E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013609 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00556 Car_Chr16 FPKM 9.796295 10.561884 23.09259 23.413973 21.540995 18.793575 22.635921 39.636482 41.672447 41.7061