Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00563 ATGGGGAATGATAGAGCTGTAAAACAACAGGGAACCGTAGCGCGCTCTGGGCGTGCTCATGAGTTCATATCAAGTTCGTTTCGTGCTTTTTCTAGTTACATGAAGATTGTTTCTGCTGGTGCTTCGACTGTGGCACGGTCCGCTGCATCAGTGGCATCTTCTTTGGTGGATAAGGAGGATGAAGCAAATGGCTTCCAGGTGAACTGGGCTGGTTTTGACAAGTTAGAGTGGGACGACAATGTCGTTCGACGGGTTCTTCTGTTAGGTTATCGTTCGGGTTTCCAGGTTTGGGACGTTGAGGAAGCAAATAATGTCCAAGACCTGGTTTCTCGTTACGATGGTTCTGTTTCATATATGCAAGTGTTGCCCAGACCAATACCGTCGATGAGATCGGGTGATAAGTTTACAGAAAGTAGACCATTGCTGGTGCTTTCTGCTTATGGTTCCATTACTGCTGGTTTTAAAATTCAGGATCGATTAGCAACTTCTGGCAATGCAGCCGTCCCAAAGGTCCAGGAACTAGCCGTTGCCGGTTTTATGCCTACTTTTGTTAGGTTTTATTCCTTGAAATCTCAAACCTACGTGCACGAGCTCAAATTTAGATCGGTTGTTTATTCTGTGAGATGCAGTGCCCTGGTTGTTGCCATTTCTCTCTTTACTCAGATACACTGCATCAATGCTACAACTTTGGAGACAGAACATATCATTCATACAAATCCTGTTGCTTCTGGATTTCTGGGTTCTGGAGGAGGTATCGGTTATGGACCTCTTGCGCTGGGATCCCGGTGGCTGGCTTATAGTGGAAGTCCTATCATTGCGTCGAATGTAGGGCGAGTGACACCACAGCACTTAAAACCTTCTGCTAGTTTATCTCATTCTTCTTTAAATGGAAGTTTAGTTGCTCACTATGCGAAGGAATCGAGTAAGCAACTTGCAGCAGGCCTTGTTACCATCGGTGATAAGGGTATTAAGAAGCTATCGAGATATTACTCGGAGCTCTTGCCCGATAGCAACAATTCTCATCAACATGGAGCTCAGGGTTTGAATGGTATTGGATATCTTAAAGATCATGTGGCTGATGCAGATAGTGTTGGAATGGTTATTGTGAAAGACATTATCAGCAAATCGGTTATCACGCAGTTTCGGGCTCATAAGAGCCCTATTTCTGCTTTATGCTTTGATCCGAGCGGCACCATCTTGGTGACAGCTTCTATTCAGGGTCATAACATAAATGTTTTCAACATTACGCCGAGTTCGAGTTCGAGTTCGAATTCATCTGTGTCTAGTACTGGTGCGTCTTATCGCCATCTCTACAGACTCCAACGAGGCTTCACTAATGCAGTCATACAAGACATCAGTTTCAGCTATGATAGCAACTGGATCATGATTAGTTCGTCCAGAGGGACGAGTCATCTCTTTGCTATAAACCCTGCTGGAGGACAGGTGAATTTCCCATCTACTAGTTCTGCTACCAGAACTGATGGGTTAGTAGTTCCTGCAAGACAAACCGTTTGGTTGGTCGATTCTGGTTTACACATGCCTCGTAAGCAGAATGAATGTGCTACTGGAGGTCCGATTACGCTTTCTGCTGTTAGTAGAATACATCATGGAAGTAATGGCTGGCGAGGCACTGTTAGTAGTGCTGCAGCTGCTGCTACGGGTAGAATCGGTTCTGTTACGGGAGCTATCGCTTCAGCTTTCCACAACTGCAAGGGAAATGCTTTGCATATGGACCATGGATCGTCCGAGGCTAGGTACCACATATTAGTTTTTACTCCAACTGGAAGTATGATACAGTACGTGTTGCAAGTGGGTTTAGATTCAGCCATAGCTTTACCGATATCCAGCACAGCTCTCGACTTAGTTCCTGAGTTCGATGCAAGAGTAGCAGTTGAAGCAGTCCAGAAATGGAATATTTCTCAGAAACAAAACCGTAGGGCCCGAGATAATAACGTTGACATATACGGTGACAATGGAGCTTTAGATTGCAATAAAAATTACTGTGGAGAAATGAATGGAAAGCCTTCTGTTCTTGAAGCTAGTGGCACTGTCTCGAAGGCAAAGACTTGCACGGAGGAACAACACCACTTGTATATCTCGGAAGCGGAACTGCAGATGCATGCTGACCGTACTCCGCTGTGGACAAAACCCGAGATATATTTTCAAGTGATGGCAAGAGATGGTGTCAAAGGTGACGAAATAGATCAACTAGGAGAAACCGAAATCGAAAGGATCCCGACTCGTATGGTTGAAGCTCGGTCGAAGGACCTAGTTCCAGTTTTTAACCATCTTCAGTCACCTAAAATCTCACAGACAAGGTCTTTAAATAGGAACAGTGACCAACTATTGCTGCACCAGAAGTCCGACCTATTTGAAAATGGAAGGCAATCAAGGAGGAACGATGCGAGTCCCAATGGGTCGGTTATCAGCAACGGACCTAAAGGAACGGGTAAGCATGGTTACAAAATGGTGACAGAAACCAAGGGCGTTGTAAATGGCTATGAAGGCCCAAGGTCGTTGCATCCCGAGCTCGATAATGTAAATAATTGTACAGAGAGCTTAAGCATGGAGTGTTGTCAACCCAAGTCTGTAAATAACCATGAAAGTGGCGTGGAGGTGGAGGATGATTTTGAAGGCATATGTGATTTGTTTGAT 2655 44.93 MGNDRAVKQQGTVARSGRAHEFISSSFRAFSSYMKIVSAGASTVARSAASVASSLVDKEDEANGFQVNWAGFDKLEWDDNVVRRVLLLGYRSGFQVWDVEEANNVQDLVSRYDGSVSYMQVLPRPIPSMRSGDKFTESRPLLVLSAYGSITAGFKIQDRLATSGNAAVPKVQELAVAGFMPTFVRFYSLKSQTYVHELKFRSVVYSVRCSALVVAISLFTQIHCINATTLETEHIIHTNPVASGFLGSGGGIGYGPLALGSRWLAYSGSPIIASNVGRVTPQHLKPSASLSHSSLNGSLVAHYAKESSKQLAAGLVTIGDKGIKKLSRYYSELLPDSNNSHQHGAQGLNGIGYLKDHVADADSVGMVIVKDIISKSVITQFRAHKSPISALCFDPSGTILVTASIQGHNINVFNITPSSSSSSNSSVSSTGASYRHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPAGGQVNFPSTSSATRTDGLVVPARQTVWLVDSGLHMPRKQNECATGGPITLSAVSRIHHGSNGWRGTVSSAAAAATGRIGSVTGAIASAFHNCKGNALHMDHGSSEARYHILVFTPTGSMIQYVLQVGLDSAIALPISSTALDLVPEFDARVAVEAVQKWNISQKQNRRARDNNVDIYGDNGALDCNKNYCGEMNGKPSVLEASGTVSKAKTCTEEQHHLYISEAELQMHADRTPLWTKPEIYFQVMARDGVKGDEIDQLGETEIERIPTRMVEARSKDLVPVFNHLQSPKISQTRSLNRNSDQLLLHQKSDLFENGRQSRRNDASPNGSVISNGPKGTGKHGYKMVTETKGVVNGYEGPRSLHPELDNVNNCTESLSMECCQPKSVNNHESGVEVEDDFEGICDLFD 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3566404 3570463 + Carg05648-RA Car16g00563 163715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00563 885 Pfam Breast carcinoma amplified sequence 3 524 759 IPR022175 -
Car16g00563 885 MobiDBLite consensus disorder prediction 790 821 - -
Car16g00563 885 MobiDBLite consensus disorder prediction 797 812 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00563 - - - bhj:120085734 1342.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00841 Car16g00563 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00913 Car-Chr10:6108772 Car16g00563 Car-Chr16:3566404 3.74E-149 transposed
Car17g01083 Car-Chr17:8394927 Car16g00563 Car-Chr16:3566404 1.36E-125 transposed
Car16g00563 Car-Chr16:3566404 Car09g00841 Car-Chr9:5129200 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00563 Car_Chr16 FPKM 21.428856 21.448963 10.610737 10.667069 13.524271 13.827052 15.01545 12.791184 11.009264 12.656446