Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00566 ATGGTTGGACCTGCTATTAATGTCAGGACCCGTTTGTCCTTCTCCGACGTTAATGGCGGAGAGGAGCTTTGTCTTACGAGTGCTCCGACGAGCATTGCCGGCTCTGAGTGCGGTGGCATTGAGTTCACTAAAGAGGACGTTGAGGCTTTGTTGAATGAGAAGCTTAAAAGGAAGGATAGGTTTAATCTAAAGGTCAGTCCCTCCTTTTCAGCGGTTAAGGAAAAATGTGATAACATGGTGGAGTACATTAAAAGGCTTAAACTCTGCATCAAATGGTTCCAAGAGCTTGAGTATAGCTACTTATTAGAGCAGAGGAAGCTACAAGATGAGCTAGAAACCTCTGAGATCAAGTCCAGTGAAATGGAGATGATAGTGAAGAACAAGGAAGAGGAATTGAATTCTATCATTGTAGAACTTAGAAAGAACAATGCATTCTTGCGAGAGAAATTCACACAAGAAGAATCCGAGAAGTTGGCTGCAGTAGAGTCTCTCACTAAGGAGAAAGAGGCTAGGCTCATAATGGAGAGGTCACAGGCTTCGATCTCCGAGGAGCTTGCAAGGGCTCAACGTGAGCTCTCGAGTGCGAATCAAAAGCTATCGTCTCTTAATGAGATGTACAAGAGGTTGCAGGATTACATTACGAGTTTACAACAATATAATGGCAAACTTCATACCGAGCTTTCGACTGCTGAGGATGACCTCAAACGAGTAGAGAAAGAAAAAGCTGCCATGGTAGAGGATCTCAGTATGATCAAGGGCGAACTTGCATTGTCTAAAGCTTCTCAAGACGAGGCATTAAAGCAGAAGGATGCTATGCTGAACGAAGTTACGTGTTTAAGACGAGAAATACAACAGGTTAGAGACGATCGAGATCGTCAACTCTCTCTGGTGCAGACTTTGACAGATGAAGTAGAGAATTGCAGGGAGTCAGCAGAGAAGTACTGTGAGGAGCTGGATGAAATGAAGGCAAAAGCAAATGAATTAGAGGCAAGATGTTCTTCACAAAGCATTGAACTAAAAACATTGCAAAATCATCTAGCTGCTGCAGAAAACAAGCTGCAGGTCTCTGATCTAACTGCAATGGAGACGATGCACGAATTCGAAGATCAACGGAGACTCGTAAGTGAGTTACTAGCACGGCTCGGAGATGCAGAAACTAAGCTAATGGAAGGAGAGATGCTTCGAAAGAAACTGCATAATACCATATTGGAATTGAAAGGGAACATTCGTGTATTCTGTCGAGTGCGACCTTTGTTACCTGATGAACGTTCTAGCCCCGAAGGAAATTTCATCTCGTACCCGTCATCAGTCGAATCGCTTGGACGAGGAATCAATCTAGTGCAAAATGGGCAACGACATTCTTTCACGTACGACAAGGTTTTTGCACCGGAAGCAACACAGGAAGACGTCTTTGTAGAGATTTCCCAGCTTGTACAAAGCGCCCTCGACGGTTATAAGGTTTGTATATTTGCGTACGGTCAAACGGGTTCGGGAAAAACGTATACAATGATGGGTAAAACAGGGTTTCTAGAGGAGAAGGGACTGATACCTCGATCATTGGAACAAATATTTCAAACCAGGCAATCTCTTCAACCTCAGGGTTGGAAATATGATATGCAGGTATCGATGTTGGAAATATACAACGAAACGATCCATGATTTACTATCATCAAACCGATCAGCTCCAGATGTGCTACGAGCAGAAAATGGTTCTCCTTTGAAACCGTACTCGATCAAACACGATGCAAATGGAAACACACAAGTGTCTGATCTTACAGTTGTAGATGTTCGTAGCGCCAAGGAGGTCTCGTTTCTATTACAGGAAGCTTCTCGGAGCAGATCTGTTGGCAAAACCCAAATGAACGAGCAATCATCGAGAAGTCATTTTGTGTTCACTCTTAAAATATCCGGTGTCAACGAGAGTACTGATCAACAAGTACAAGGCGTTTTGAATTTGATTGATCTTGCTGGGAGTGAGCGTCTTTCCAAGAGCGGATCGACGGGGGAACGACTGAAAGAAACCCAAGCCATAAATCGAAGTTTATCGTCTTTGAGCGATGTTATATTTGCTTTGGCAAAGAAGGAAGAACATGTGCCATTTAGAAACTCAAAGCTTACATATCTTCTTCAGCCTTGTCTCGGTGGAGATTCGAAGACGTTGATGTTTGTAAATATCTCTCCCGATTCCTCCTCGGCTAACGAGTCGCTCTGCTCGCTTCGCTTTGCTGCTCGGGTCAATGCTTGCGAGATCGGTACTCCTCGACGTCTAACCAATACACGACCTTAA 2286 43.88 MVGPAINVRTRLSFSDVNGGEELCLTSAPTSIAGSECGGIEFTKEDVEALLNEKLKRKDRFNLKVSPSFSAVKEKCDNMVEYIKRLKLCIKWFQELEYSYLLEQRKLQDELETSEIKSSEMEMIVKNKEEELNSIIVELRKNNAFLREKFTQEESEKLAAVESLTKEKEARLIMERSQASISEELARAQRELSSANQKLSSLNEMYKRLQDYITSLQQYNGKLHTELSTAEDDLKRVEKEKAAMVEDLSMIKGELALSKASQDEALKQKDAMLNEVTCLRREIQQVRDDRDRQLSLVQTLTDEVENCRESAEKYCEELDEMKAKANELEARCSSQSIELKTLQNHLAAAENKLQVSDLTAMETMHEFEDQRRLVSELLARLGDAETKLMEGEMLRKKLHNTILELKGNIRVFCRVRPLLPDERSSPEGNFISYPSSVESLGRGINLVQNGQRHSFTYDKVFAPEATQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKTGFLEEKGLIPRSLEQIFQTRQSLQPQGWKYDMQVSMLEIYNETIHDLLSSNRSAPDVLRAENGSPLKPYSIKHDANGNTQVSDLTVVDVRSAKEVSFLLQEASRSRSVGKTQMNEQSSRSHFVFTLKISGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGERLKETQAINRSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDSSSANESLCSLRFAARVNACEIGTPRRLTNTRP 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3577026 3581174 - Carg05651-RA Car16g00566 163718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00566 761 Coils Coil 129 156 - -
Car16g00566 761 PRINTS Kinesin heavy chain signature 484 505 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00566 761 PRINTS Kinesin heavy chain signature 618 635 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00566 761 PRINTS Kinesin heavy chain signature 649 667 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00566 761 PRINTS Kinesin heavy chain signature 698 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00566 761 PANTHER KINESIN-LIKE PROTEIN 8 761 - -
Car16g00566 761 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 761 - -
Car16g00566 761 Gene3D Kinesin motor domain 403 759 IPR036961 -
Car16g00566 761 SMART kinesin_4 406 756 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00566 761 ProSitePatterns Kinesin motor domain signature. 648 659 IPR019821 GO:0003777|GO:0005524|GO:0007018
Car16g00566 761 Coils Coil 262 289 - -
Car16g00566 761 Gene3D - 177 374 - -
Car16g00566 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 746 IPR027417 -
Car16g00566 761 Pfam Kinesin motor domain 414 746 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00566 761 Coils Coil 178 212 - -
Car16g00566 761 ProSiteProfiles Kinesin motor domain profile. 408 748 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00566 761 Coils Coil 220 247 - -
Car16g00566 761 CDD KISc_C_terminal 406 750 - -
Car16g00566 761 Coils Coil 297 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00566 K10405 KIFC1; kinesin family member C1 - csv:101215636 1340.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00838 Car16g00566 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00947 Car-Chr8:6337364 Car16g00566 Car-Chr16:3577026 1.06E-33 dispersed
Car13g00571 Car-Chr13:7582661 Car16g00566 Car-Chr16:3577026 0 dispersed
Car16g00566 Car-Chr16:3577026 Car18g00305 Car-Chr18:1835810 0 dispersed
Car17g00206 Car-Chr17:1259658 Car16g00566 Car-Chr16:3577026 3.80E-12 transposed
Car16g00566 Car-Chr16:3577026 Car09g00838 Car-Chr9:5114425 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00566 Car_Chr16 FPKM 0.541345 0.313051 1.58067 2.14045 0.316828 0.317104 0.0 7.994308 7.688455 7.539171