Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00601 ATGTGGCTGCAGAAAGGAAACAGCGTGAATGGCACGAAAAAGGGAGGAATAGCCGGAAGAGGAAATGGATTGGTGGCGATCGGCGTTGATAGGGAAAAAGGAAGTCAAAATGCTCTCCGATGGGCCACCGAGCATCTGCTCGTCAAGGGTCAAACCGTGATATTAATCCATGTAGTTCAGAGACCTTCCACTGCGGCTGCTTATTTGATTGGGGGAGCCATTATTTGTAATAGCGATGGCAGTTTCGCCGGTAATTCCCCTCGTAAACAGCAGCTCGAGATGCAGACTCGTGACATTTTTCTCACCTTCCATTGCTATTGTACTCGTAAGGATATTCATTGCCTTGATGTCATATTGGAAGATACTGATGTGGTGAAAGCGTTAACTGAATACGTCTCGTATAGTGCGATCGAAAACTTGGTGCTTGGGGCTCCATCGAAACATGGATTTATCAGGTTTAAGTCGTCGAGCATGGGGAGTAGTGTGTCGAAAGGGGCACCGGATTTCTGCACTGTATATGTCATCTCAAAGGGAAAGGTGTCGTCGGTGAGACATGCCACTCGCTTGGCTCCCGCTGCTTCTCCTCTACTAGACCATTTGCAGAAGTTATCGAAGCCGATCGTAAAGGGAACGGGCACTCCTCAACATAAGTTTAATTTAAGAGACAGGACATCATTCAAGCCTCGGAATTTTCAAGATGAATCAATCAAGCCAGAAATATCTCAGGGAGTGGATAGAACTTCTATTTCCAAATATAGTGGAGGGTTCTCCGAGTCAGAATCCGACATATCCTTCATAAGCTCAGGAAGACCAAGCACGGATCGTACTTCTTCTGTTGCACTTGACTATGAATCCGCCCCACTGCAATATTCAAACAGCTCAGACCAAAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCACAATCAACTCAATGATTTCTCATCACTTTCAGATGAGAGCTGCAGGACATCATTTTCCTGTTCTTCTCAGAACTTGGATGAAGCAGAGCTTGAAATGAAGAGGTTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCTTGTAAAGAAGCACTAACAGCAAAGCAGAAGGCAAGGGAACTAAATAACTGGAGATGTGAAGAAGAACAGAAACTAGAAGAGGCGCGGCTTGCACAAGAAGCAGCAATGGCTATTGCAGAGCAGGAGAGAGCGAGATGCCAAGCGGCGATGGAAGCAGCTGATGCAGCTAAGAAAATAGCTGAGTTAGAATCATATAAAAGAGAAAATCTAGAGATAGAAGCACTTAAAGAAGCAGAGGAAATGCAAAGAGCATTGAAAAATCTTGCACAAAGTGACATCAGATACAGGAGATATACAATTGAGGAGATTGAATCAGCAACAGAAAATTTTGCACAGTCTCGGAAGATAGGGGAAGGAGGTTATGGACCTGTTTTTCATTGTCGTCTTGATCACACATCGGTTGCGGTCAAGGTTTTGCGCCCCGATGCGACTCAAGGAAGGGAACAATTTCAGCGAGAGATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTTGGAGCATGCCCAGAATATGGCATTCTAGTGTACGAGCACATGTCGAACGGAAGTTTGGAGGATCGACTCTTCCGAAAGGGGAACACCCCTGCTATTCCTTGGCAGTACCGGTTTCGAATTGCTGCTGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACCAAACCAGAGCCATTAGTGCACCGTGATCTCAAGCCAGCTAACATATTGCTAGACTACAATTATGTTAGCAAAATAAGCGACGTTGGTTTGGCTAGACTTGTACCCGCCGTGGCCGAAAATGTAACACAATGCTACATGACTTCAGCTGCTGGAACTTTCTGCTATATAGACCCTGAATATCAACAGACTGGAATGCTTGGGGTTAAATCTGATGTCTACTCATTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCGCCCATGGGGTTGGCTCACCAAATTGCTCGAGCTATTGAGAAGGGGACTTTGGCGGATTTTCTGGACCCAGCTGTGGATGATTGGCCAGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGACGAAAAGACAGACCAGATCTTGCCAATGATGTAATGAGCGATCCACAACTACTGATGATTTCAGGAAGTTCGAAGAGCCAATCTAGTGAATCATCACAGGTAGGAGGAGAATGA 2262 45.0 MWLQKGNSVNGTKKGGIAGRGNGLVAIGVDREKGSQNALRWATEHLLVKGQTVILIHVVQRPSTAAAYLIGGAIICNSDGSFAGNSPRKQQLEMQTRDIFLTFHCYCTRKDIHCLDVILEDTDVVKALTEYVSYSAIENLVLGAPSKHGFIRFKSSSMGSSVSKGAPDFCTVYVISKGKVSSVRHATRLAPAASPLLDHLQKLSKPIVKGTGTPQHKFNLRDRTSFKPRNFQDESIKPEISQGVDRTSISKYSGGFSESESDISFISSGRPSTDRTSSVALDYESAPLQYSNSSDQSFASLPFKPKWTDHNQLNDFSSLSDESCRTSFSCSSQNLDEAELEMKRLKLELKQTMEMYSTACKEALTAKQKARELNNWRCEEEQKLEEARLAQEAAMAIAEQERARCQAAMEAADAAKKIAELESYKRENLEIEALKEAEEMQRALKNLAQSDIRYRRYTIEEIESATENFAQSRKIGEGGYGPVFHCRLDHTSVAVKVLRPDATQGREQFQREIDILSCIRHPNMVLLLGACPEYGILVYEHMSNGSLEDRLFRKGNTPAIPWQYRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDYNYVSKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHQIARAIEKGTLADFLDPAVDDWPVEQALCFAKLALQCAELRRKDRPDLANDVMSDPQLLMISGSSKSQSSESSQVGGE 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3847962 3853674 - Carg05686-RA Car16g00601 163753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00601 753 Coils Coil 381 415 - -
Car16g00601 753 ProSiteProfiles Protein kinase domain profile. 469 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00601 753 MobiDBLite consensus disorder prediction 734 753 - -
Car16g00601 753 Pfam Protein kinase domain 470 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00601 753 Coils Coil 421 450 - -
Car16g00601 753 MobiDBLite consensus disorder prediction 251 278 - -
Car16g00601 753 Coils Coil 328 355 - -
Car16g00601 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01203 Car-Chr1:11104296 Car16g00601 Car-Chr16:3847962 0 dispersed
Car05g00561 Car-Chr5:3293190 Car16g00601 Car-Chr16:3847962 5.59E-56 dispersed
Car09g00466 Car-Chr9:2597386 Car16g00601 Car-Chr16:3847962 0 dispersed
Car12g00884 Car-Chr12:8744495 Car16g00601 Car-Chr16:3847962 0 dispersed
Car16g00601 Car-Chr16:3847962 Car17g00668 Car-Chr17:6195832 0 dispersed
Car16g00601 Car-Chr16:3847962 Car19g00547 Car-Chr19:7039718 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89441 PF00069 Pkinase 3.60E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00601 - - csv:101202855 1156.35