Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g00627 | ATGTCGAAAGAGGTGATGGAAGAAGGACAATCCGGCCTGAGAAAGGACTACGTCGACCCACCGCCGGCCCCGCTCATCGACGTCGCCGAACTCTCCCTCTGGTCCTTTTACAGAGCACTAATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACGATCGCCACCGTCATCGGCAACAACAAACAGACCAAGGTTTGCGACGGCGTCGGAATCCTCGGAATCGCTTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGAATCTCAGGTGGACACATTAATCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATCAGAGCCGTCGGGTACATGGTAGCGCAGTGTGCCGGAGCAATCGTCGGCGTTGGGTTGGTTAAGGCGTTTATGAAGCACGATTATAACGGCCACGGCGGCGGAGCTAACTCCGTTCAGTCTGGTTACAGTAGGGGTACGGCTCTTGGCGCTGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACCGATCCCAAGAGAAGCGCGCGTGACTCTCACATTCCGGTTTTGGCGCCATTGCCGATTGGATTTGCGGTGTTTATGGTTCATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCGGCGAGAAGCTTCGGCGCCGCCGTGATTTACAACAGTGAAAAAGCCTGGAACGACCATTGGATCTTCTGGGTCGGTCCGTTCGTCGGAGCACTGGCGGCGGCTGCGTACCACCAGTATATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACCAACTGA | 843 | 55.99 | MSKEVMEEGQSGLRKDYVDPPPAPLIDVAELSLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKVCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAIVGVGLVKAFMKHDYNGHGGGANSVQSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNSEKAWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN | 280 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 4005989 | 4007074 | + | Carg05712-RA | Car16g00627 | 163779 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g00627 | 280 | Pfam | Major intrinsic protein | 31 | 258 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Car16g00627 | 280 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02491 | Car-Chr4:19784872 | Car16g00627 | Car-Chr16:4005989 | 3.66E-153 | dispersed | |
| Car16g00627 | Car-Chr16:4005989 | Car08g00606 | Car-Chr8:3926839 | 1.54E-39 | dispersed | |
| Car16g00627 | Car-Chr16:4005989 | Car04g01446 | Car-Chr4:8395801 | 3.85E-157 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g00627 | K09872 | - | csv:101209627 | 545.043 |