Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00635 ATGGGTATGGAGCAAAACAATCACGATGCAGAGGAGGGGACTCTGGAGATTGGCATGGAATATAGAACAGTCTCTGGTGTTGCTGGTCCATTGGTTATTCTGGACAAAGTCAAGGGACCTAAGTTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGATCAACCAGACGTGGTCAAGTCCTGGAAGTTGATGGAGAGAAAGCTGTTGTCCAGGTTTTTGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTTTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATCCTGCCCGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAAAGAACTTATCCCGAAGAGATGATACAGACGGGGATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAGGCTGGCTTGGTAAAGCGGTTGGAGAAATCTAAAGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTTAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATCGCTCTTACCACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAGCGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTAACCATGCCTAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACTGAGGGACAGATTTACATCGATAGGCAGCTCTATAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCTATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGAAAGGATGTTCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCGCTCTCTTCTGAGGATCTGCTCTATTTAGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTGAGTCAAGGAGCTTACGACACTCGAAACATTTTCCAATCGCTCGATCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTCCACCGTATACCTGCAAAGACTCTTGATCAGTTTTACAGCCGAGAATCTGCAAATTGA 1467 43.56 MGMEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSKDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4040437 4045643 + Carg05720-RA Car16g00635 163787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00635 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Car16g00635 488 CDD V_A-ATPase_B 92 379 - -
Car16g00635 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Car16g00635 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Car16g00635 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Car16g00635 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Car16g00635 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 488 - -
Car16g00635 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Car16g00635 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Car16g00635 488 Gene3D - 29 488 - -
Car16g00635 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Car16g00635 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Car16g00635 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 488 IPR022879 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01533 Car-Chr4:8897149 Car16g00635 Car-Chr16:4040437 2.73E-13 dispersed
Car16g00635 Car-Chr16:4040437 Car18g00906 Car-Chr18:9874969 4.10E-28 dispersed
Car16g00635 Car-Chr16:4040437 Car19g00587 Car-Chr19:7271788 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00635 K02147 - csv:101211838 957.207