Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00643 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTCTTTTGCGCTGCTGACGAAGCCGCGCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCGAGTGACGTTCCCCGTTGTGATATATGCGAGAACGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTATGTTTGCAATGTGACATGATCGTTCACGTTGGAGGGAAACGAACACATAAGCGATACCTTTTGTTAAGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTTCCAATGATATTAGTAAAGGACATAACCTGCCACCACCGCATAAAGTGACCGTGGAAGACAACCAACAAAATCATCACCGACTATCACCTGTTCGAGAAGCTAACGACGATGGTCATGCCGAGACCGACACGAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 46.35 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVSNDISKGHNLPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4091604 4094210 + Carg05728-RA Car16g00643 163795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00643 186 MobiDBLite consensus disorder prediction 139 159 - -
Car16g00643 186 MobiDBLite consensus disorder prediction 105 159 - -
Car16g00643 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car16g00643 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Car16g00643 186 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Car16g00643 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00645 Car-Chr3:5830640 Car16g00643 Car-Chr16:4091604 8.63E-73 dispersed
Car07g00389 Car-Chr7:1970360 Car16g00643 Car-Chr16:4091604 1.18E-65 dispersed
Car16g00643 Car-Chr16:4091604 Car02g00898 Car-Chr2:6373712 1.05E-07 dispersed
Car16g00643 Car-Chr16:4091604 Car04g00690 Car-Chr4:4019555 6.85E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4946 PF00643 zf-B_box 2.40E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00643 - - csv:101208899 379.407