Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00643 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTCTTTTGCGCTGCTGACGAAGCCGCGCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCGAGTGACGTTCCCCGTTGTGATATATGCGAGAACGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTATGTTTGCAATGTGACATGATCGTTCACGTTGGAGGGAAACGAACACATAAGCGATACCTTTTGTTAAGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTTCCAATGATATTAGTAAAGGACATAACCTGCCACCACCGCATAAAGTGACCGTGGAAGACAACCAACAAAATCATCACCGACTATCACCTGTTCGAGAAGCTAACGACGATGGTCATGCCGAGACCGACACGAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 46.35 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVSNDISKGHNLPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4091604 4094210 + Carg05728-RA Car16g00643 163795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00643 186 MobiDBLite consensus disorder prediction 139 159 - -
Car16g00643 186 MobiDBLite consensus disorder prediction 105 159 - -
Car16g00643 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car16g00643 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Car16g00643 186 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Car16g00643 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00643 - - - csv:101208899 379.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00645 Car-Chr3:5830640 Car16g00643 Car-Chr16:4091604 8.63E-73 dispersed
Car07g00389 Car-Chr7:1970360 Car16g00643 Car-Chr16:4091604 1.18E-65 dispersed
Car16g00643 Car-Chr16:4091604 Car02g00898 Car-Chr2:6373712 1.05E-07 dispersed
Car16g00643 Car-Chr16:4091604 Car04g00690 Car-Chr4:4019555 6.85E-127 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00282 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Car02g00898 . 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 8.8e-58 221.5
Car10g00391 CCT 58 412 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.8e-55 213.8
Car02g00898 . 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 2.1e-64 243.4
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.7 2.5e-92 336.3
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 7.1e-87 318.2
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 3.5e-86 315.8
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 4.6e-86 315.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car20g00702 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.2 8.7e-44 174.9
Car16g00643 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.9e-56 214.9
Car04g00690 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.7e-56 214.2
Car07g00389 CST 1 139 C2C2-CO-like Transcription Factor Family AT2G21320 66.9 2.3e-48 189.1
Car03g00645 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Car16g00643 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.6e-58 220.7
Car04g00690 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Car07g00389 CST 1 138 C2C2-CO-like Transcription Factor Family AT4G38960 71.8 2.4e-51 199.1
Car03g00645 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Car12g00406 CST 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4946 PF00643 zf-B_box 2.40E-06 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00643 Car_Chr16 FPKM 12.005203 13.524303 12.204456 13.028645 11.012746 7.92244 9.972514 13.614396 14.929064 16.521555