Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g00653 | ATGTCGTTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATTAAAGATGGAATTGGGAGCATTTCGAAACGAGGAGAAGAAGGGAGTAGGCATTGGCGCAACCGAACAATGTCACACATTGCACCTGATCAAGAAGAACATTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTACCCCCCGAATTACTTCTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTTCTCGAGCTGTAGTCGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGTTTGGCTCCTTCGGAGGACGAAAAACATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTAGTAGCTGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGATAGCCAGCCTCCTTGTGACCCTGCAGCTCAGCAAAGTAGTCGATCAAGCCGTAGATTTCACTCTAAGCAAGTCTCTCCTAGGGTACCTGCATGTAACTACAGTGTAGGTACAGTTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCGTCATGCAAACGATTCCAGTTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCATTCACTCACTCTATTGATGACCACCTTTCTATCGAGTCCGATTCTATGAGAAAGGATTCAGGCAAGGACTTCGGCTCAAAGACCCCATCAGAACCAGCAGTTCAGGGATCAGATGAATCGTTAGTGCTTAAAAACAAGGCACCAAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACCGTGGCATCGGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATGAATCTCACAATGTTTCAGTAGAAGAGCAAGAGAAGGTAATTCTCCAGTTTGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAGTGA | 1245 | 45.86 | MSFKSFVRELREIKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEEHSPLELIQQGRWANLPPELLLDIIRRVEESETSWPSRAVVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLAPSEDEKHKLLLAAKRVRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQSSRSSRRFHSKQVSPRVPACNYSVGTVSYELNVLRTRGPRRMQCVMQTIPVSSIQEGGTAPTPTSFTHSIDDHLSIESDSMRKDSGKDFGSKTPSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDESHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 4150748 | 4154246 | + | Carg05738-RA | Car16g00653 | 163805 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g00653 | 414 | MobiDBLite | consensus disorder prediction | 293 | 320 | - | - | |
| Car16g00653 | 414 | MobiDBLite | consensus disorder prediction | 209 | 224 | - | - | |
| Car16g00653 | 414 | ProSitePatterns | Tub family signature 1. | 342 | 355 | IPR018066 | - | |
| Car16g00653 | 414 | MobiDBLite | consensus disorder prediction | 208 | 228 | - | - | |
| Car16g00653 | 414 | ProSitePatterns | Tub family signature 2. | 399 | 414 | IPR018066 | - | |
| Car16g00653 | 414 | Pfam | F-box domain | 57 | 103 | IPR001810 | GO:0005515 | |
| Car16g00653 | 414 | Pfam | Tub family | 118 | 409 | IPR000007 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01497 | Car-Chr1:12703505 | Car16g00653 | Car-Chr16:4150748 | 0 | dispersed | |
| Car07g00424 | Car-Chr7:2158858 | Car16g00653 | Car-Chr16:4150748 | 0 | dispersed | |
| Car08g01080 | Car-Chr8:7360312 | Car16g00653 | Car-Chr16:4150748 | 4.13E-152 | dispersed | |
| Car09g00133 | Car-Chr9:637201 | Car16g00653 | Car-Chr16:4150748 | 0 | dispersed | |
| Car16g00326 | Car-Chr16:2007663 | Car16g00653 | Car-Chr16:4150748 | 2.32E-160 | dispersed | |
| Car16g00653 | Car-Chr16:4150748 | Car04g00698 | Car-Chr4:4053007 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4947 | PF01167 | Tub | 5.00E-107 | CL0395 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g00653 | K19600 | - | csv:101205595 | 768.074 |