Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g00679 | CCTTACAGAACTCACCATCCATTTTTGTTCCCAAACAAACTCCATTTTCATCCTTCTCTCTCTCTCTCTCTCTCTTCACCTGCTTATCGGACCATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAGCTCTGTTTTCGCGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTTGTCGACCAACTCCTCGATTTCTCCAATGATGATCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCACGATGACTCTGTTTCTCTTTCCGGTCGAGAAATTCATCAGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCTTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGAAACCGAGCCACGGTGGTTCCATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCAGTAAAGGCTAGAAGCAAACGGACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCAAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAACGTCGGAGCTCAGCCTCCACGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAG | 1050 | 51.14 | PYRTHHPFLFPNKLHFHPSLSLSLSSPAYRTMECVDGALEILQLSPQLCFRDNGCFNPQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGREIHQNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKKPSHGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFEPEIPKKKPRRKSLSEKPKTNVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 4315488 | 4316848 | + | Carg05764-RA | Car16g00679 | 163831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g00679 | 349 | ProSiteProfiles | GATA-type zinc finger domain profile. | 264 | 300 | IPR000679 | GO:0006355|GO:0043565 | |
| Car16g00679 | 349 | ProSitePatterns | GATA-type zinc finger domain. | 270 | 295 | IPR000679 | GO:0006355|GO:0043565 | |
| Car16g00679 | 349 | MobiDBLite | consensus disorder prediction | 212 | 232 | - | - | |
| Car16g00679 | 349 | Pfam | GATA zinc finger | 270 | 304 | IPR000679 | GO:0006355|GO:0043565 | |
| Car16g00679 | 349 | MobiDBLite | consensus disorder prediction | 166 | 197 | - | - | |
| Car16g00679 | 349 | MobiDBLite | consensus disorder prediction | 212 | 277 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00231 | Car-Chr2:1503706 | Car16g00679 | Car-Chr16:4315488 | 5.39E-60 | dispersed | |
| Car02g01335 | Car-Chr2:8829645 | Car16g00679 | Car-Chr16:4315488 | 3.98E-08 | dispersed | |
| Car16g00679 | Car-Chr16:4315488 | Car20g00695 | Car-Chr20:3976946 | 5.33E-53 | dispersed | |
| Car16g00679 | Car-Chr16:4315488 | Car03g00646 | Car-Chr3:5835214 | 2.08E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4952 | PF00320 | GATA | 1.60E-15 | CL0167 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g00679 | - | - | cmax:111483139 | 564.303 |