Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00679 CCTTACAGAACTCACCATCCATTTTTGTTCCCAAACAAACTCCATTTTCATCCTTCTCTCTCTCTCTCTCTCTCTTCACCTGCTTATCGGACCATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAGCTCTGTTTTCGCGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTTGTCGACCAACTCCTCGATTTCTCCAATGATGATCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCACGATGACTCTGTTTCTCTTTCCGGTCGAGAAATTCATCAGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCTTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGAAACCGAGCCACGGTGGTTCCATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCAGTAAAGGCTAGAAGCAAACGGACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCAAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAACGTCGGAGCTCAGCCTCCACGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAG 1050 51.14 PYRTHHPFLFPNKLHFHPSLSLSLSSPAYRTMECVDGALEILQLSPQLCFRDNGCFNPQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGREIHQNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKKPSHGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFEPEIPKKKPRRKSLSEKPKTNVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4315488 4316848 + Carg05764-RA Car16g00679 163831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00679 349 ProSiteProfiles GATA-type zinc finger domain profile. 264 300 IPR000679 GO:0006355|GO:0043565
Car16g00679 349 ProSitePatterns GATA-type zinc finger domain. 270 295 IPR000679 GO:0006355|GO:0043565
Car16g00679 349 MobiDBLite consensus disorder prediction 212 232 - -
Car16g00679 349 Pfam GATA zinc finger 270 304 IPR000679 GO:0006355|GO:0043565
Car16g00679 349 MobiDBLite consensus disorder prediction 166 197 - -
Car16g00679 349 MobiDBLite consensus disorder prediction 212 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00679 - - - cmax:111483139 564.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00231 Car-Chr2:1503706 Car16g00679 Car-Chr16:4315488 5.39E-60 dispersed
Car02g01335 Car-Chr2:8829645 Car16g00679 Car-Chr16:4315488 3.98E-08 dispersed
Car16g00679 Car-Chr16:4315488 Car20g00695 Car-Chr20:3976946 5.33E-53 dispersed
Car16g00679 Car-Chr16:4315488 Car03g00646 Car-Chr3:5835214 2.08E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00679 . 59 336 C2C2-Gata Transcription Factor Family AT5G66320 51.4 1.3e-63 240.7
Car02g01335 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.2 3.1e-133 472.6
Car16g01046 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.0 7.7e-132 468.0
Car05g00985 . 5 481 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.6e-124 443.7
Car19g00289 . 47 170 C2C2-Gata Transcription Factor Family AT4G17570 66.1 1.2e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4952 PF00320 GATA 1.60E-15 CL0167 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00679 Car_Chr16 FPKM 7.380215 9.215941 16.107748 13.661439 19.59054 17.243246 18.079445 15.792068 15.834056 22.189804