Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00684 ATGCCGACGGATTTAGAAACTTCCGGTGAAGCCAGTATCTCCTCCACTGGTAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAGAAGCGTAATTTACCAGGAATGCCAGATCCGGAAGCAGAGGTAATTGCTCTGTCACCGGAAACCCTTTTGGCCACAAATCGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTACACCGGCGAGGTCATAATCTTCCATGGAAACTCCGGCAACGAACGAGCAAAGAAGTGAAAAAGAAAGTGTATGTCTGCCCAGAGCCATCGTGCGTCCACCACCATCCGTCGAGAGCCCTCGGCGATCTCACCGGAATAAAGAAGCATTTCTGCCGGAAACACAGCGAGAAGAAGTGGAAGTGCGACCGGTGCTCCAAGAAATACGCAGTCAAGTCGGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTACAGATGTGACTGTGAAACTGTGTTTTCAAGAAGAGATAGTTTCATCACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAGGCCGCCGTTACTCTGTCTCCGGCGACGGCGGAGATTCCTAATTTGGAGTCCGATCCCCAAGTTCAGCCTCCGAGTTGTTCGTCTCCGCCGCCTACTGCTGCTTCTCTTTCCGCCACTTCCGCCGCCGCCGCCGCCCCAGTAGCTCCTCCATCATCCACTGAAGCAATATCTTCAATCTCGTCCATTCAGAAAAAAGCCTCGCCGGGAAATCCTCCGCCGCCGCTAGTAGAGGCACCAGGCAAAACGACCGTACCTAGCAACTCCAGCAGCAGCAACGCGACAGTATTGGCTAGCTTGTTTGCTTCATCCGCCGCATCACTGAGCTTACAGCCACCGCAGCAGCCCGGATTTTGCGACTTATTACGAGCCATGGCGCGACCCGATCGGGAGGCCGAAATAACACCGCCGTTGGTTTTTGAACCACTTTCTCTATGTCTGTCGAACCACAGCGAATGGTCGCTTTTCGGAGCCGGAATCCAAGAAAGTCGCCCATACGTGCCGCCAACGCCACCGGCCATGTCCGCCACTGGGCTCCTGCAGAAGGCCGCTCAAATGGGTGCTGCTGCAGCGGCCAGCACATCAGTGTTTCGTGGATTTGGTTTGTCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1203 53.28 MPTDLETSGEASISSTGNQPPPPKSAVKKKRNLPGMPDPEAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHSEKKWKCDRCSKKYAVKSDWKAHSKICGTREYRCDCETVFSRRDSFITHRAFCDALTKEAAVTLSPATAEIPNLESDPQVQPPSCSSPPPTAASLSATSAAAAAPVAPPSSTEAISSISSIQKKASPGNPPPPLVEAPGKTTVPSNSSSSNATVLASLFASSAASLSLQPPQQPGFCDLLRAMARPDREAEITPPLVFEPLSLCLSNHSEWSLFGAGIQESRPYVPPTPPAMSATGLLQKAAQMGAAAAASTSVFRGFGLSSSSSSAQQGSL 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4345668 4347936 - Carg05769-RA Car16g00684 163836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00684 400 MobiDBLite consensus disorder prediction 1 40 - -
Car16g00684 400 Pfam Zinc-finger of C2H2 type 57 79 - -
Car16g00684 400 MobiDBLite consensus disorder prediction 1 22 - -
Car16g00684 400 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Car16g00684 400 MobiDBLite consensus disorder prediction 201 225 - -
Car16g00684 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Car16g00684 400 MobiDBLite consensus disorder prediction 241 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01477 Car-Chr1:12613645 Car16g00684 Car-Chr16:4345668 2.29E-111 dispersed
Car08g00290 Car-Chr8:1858058 Car16g00684 Car-Chr16:4345668 2.95E-108 dispersed
Car11g01486 Car-Chr11:11999270 Car16g00684 Car-Chr16:4345668 3.96E-84 dispersed
Car16g00684 Car-Chr16:4345668 Car17g00674 Car-Chr17:6243622 3.05E-94 dispersed
Car16g00684 Car-Chr16:4345668 Car09g00148 Car-Chr9:719274 2.50E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4954 PF12874 zf-met 0.0027 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00684 K25869 - csv:101215476 553.518