Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00700 ATGTCTATGTTTGAGCTCACTAATTACCCTAAACATGCTCCTTTTTCAATCCAACCTTCTTCGTCCTCCTCTCTTCCAGGAAGGATGGGATTGTACGAGCCTATCCACCCAATTGGAATGTGGGGAGAAACTTTCCGAACCAATTTAGACGCACCATCTCTTCTAATGGAGGCCGATACAAAACTAGAAAATCAGTCGGATGATGCCTCGCTCGGCTCACTTGGAGATCCTCACATTTATAACCAAAAAGATACCAAACGGAATGAAAAGATTCAAAGACGGCTCGCACAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTGCGAAAAAAGGCCTATATTAAGCAATTGGAATCGAGCCGCTTAAAACTCATCCAATTGGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTGGCTGGATCCCGATTTGATAATAACCCGTCGGGTTTATCAGGAACCACAAATTCAGGCATCTCTGCATTTGAATCAGAGTATGAGCAATGGGTAGAAGAGCAGAACAGGCAGATATGTGATCTGAGGACTGCAGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACATTACTTTAAATTCTTTCGCATGAAAGCTAAAGCTGCAAAAGCAGACGTCTCCTATATCATGTCAGGCATGTGGAAAACATCAGCTGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGAAGATACTGACCGATCAACAAGTTTCCGAAACTAGTAGCCTTACGAAATCGTGTTTACAAGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTAGTGGTTGGTCAGCTGAGTGAAGGAAGTTATCCCCTACAGATGACTGCTGCAATGGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGCCTTCTTATTCTTGGGGAGTTTTTTCAACGACTCCGAGCATTGAGCTCGCTTTGGGCTAATCGTCCTTGCGAGCCTACATAG 1125 43.11 MSMFELTNYPKHAPFSIQPSSSSSLPGRMGLYEPIHPIGMWGETFRTNLDAPSLLMEADTKLENQSDDASLGSLGDPHIYNQKDTKRNEKIQRRLAQNREAARKSRLRKKAYIKQLESSRLKLIQLEQELEKARQQGLLAGSRFDNNPSGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKILTDQQVSETSSLTKSCLQAEDALRQGMEKLQQNLFESVVVGQLSEGSYPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWANRPCEPT 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4450520 4455605 - Carg05785-RA Car16g00700 163852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00700 374 ProSiteProfiles DOG1 domain profile. 159 369 IPR025422 GO:0006351|GO:0043565
Car16g00700 374 MobiDBLite consensus disorder prediction 65 88 - -
Car16g00700 374 Coils Coil 109 136 - -
Car16g00700 374 Pfam bZIP transcription factor 88 123 IPR004827 GO:0003700|GO:0006355
Car16g00700 374 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 88 132 IPR004827 GO:0003700|GO:0006355
Car16g00700 374 Pfam Seed dormancy control 176 251 IPR025422 GO:0006351|GO:0043565
Car16g00700 374 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 93 108 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02893 Car-Chr4:21804394 Car16g00700 Car-Chr16:4450520 4.37E-127 dispersed
Car15g00042 Car-Chr15:338564 Car16g00700 Car-Chr16:4450520 4.69E-122 dispersed
Car16g00700 Car-Chr16:4450520 Car12g00121 Car-Chr12:640069 4.97E-104 dispersed
Car16g00700 Car-Chr16:4450520 Car04g00736 Car-Chr4:4269395 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4958 PF14144 DOG1 1.90E-28 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00700 K14431 - csv:101208419 612.838