Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car16g00706 | ATGGGGCGAGTGAAGCTACAGATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTTTGCGATATCGATATCGCACTCATCATGTTCTCTCCTTCCAGCCGCCTCAGCCATTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAGAATAAAGAGTTTTTACTTGGAACACTGAATAATCTGAAGACAGAGAACGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAATTCAAATGTGGAGGAGCTTCAACAAGAGGTTGCTACGTTGAGACATGAGCTACAACTTGCTGAACAGCAGCTTAGGTTATTCGAACCGGATCCTTTTTCGTTTACATCGAATGGAGAAATAGAGTCATGTGAGAAGAATTTGCTCGATACCTTGGCACGGATCGCTCAAAGGAAGAAAGATGTGTTGAATAGTCATTTATCTCCGTATGATCCACCGAATGGTATTCAGTTATATTTGGATTCACAAGATGGAATAGCATCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCGGAAAACGGGCAGAACCAGAATCAAATTTGTGTGGCGGCTGAGTCGTCTTCGATTCCTCAAAGTGGTCAATATCCTGGTACAGTTTATGATCAAGTAACGCAGGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGCGACATGGGCAACCCGAACGACGATGGATACTCGCCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCGTTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACGATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGGGGATTGA | 1023 | 44.77 | MGRVKLQIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGQNQNQICVAAESSSIPQSGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNGD | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4500218 | 4502179 | + | Carg05791-RA | Car16g00706 | 163858 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car16g00706 | 340 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Car16g00706 | 340 | Coils | Coil | 115 | 135 | - | - | |
Car16g00706 | 340 | MobiDBLite | consensus disorder prediction | 311 | 340 | - | - | |
Car16g00706 | 340 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Car16g00706 | 340 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g00732 | Car-Chr1:4469957 | Car16g00706 | Car-Chr16:4500218 | 3.28E-23 | dispersed | |
Car13g00970 | Car-Chr13:9716248 | Car16g00706 | Car-Chr16:4500218 | 6.63E-24 | dispersed | |
Car16g00706 | Car-Chr16:4500218 | Car13g00658 | Car-Chr13:8107063 | 1.25E-23 | dispersed | |
Car16g00706 | Car-Chr16:4500218 | Car18g01052 | Car-Chr18:10779401 | 9.71E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4959 | PF00319 | SRF-TF | 4.00E-24 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car16g00706 | - | - | csv:101222576 | 556.984 |