Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00706 ATGGGGCGAGTGAAGCTACAGATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTTTGCGATATCGATATCGCACTCATCATGTTCTCTCCTTCCAGCCGCCTCAGCCATTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAGAATAAAGAGTTTTTACTTGGAACACTGAATAATCTGAAGACAGAGAACGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAATTCAAATGTGGAGGAGCTTCAACAAGAGGTTGCTACGTTGAGACATGAGCTACAACTTGCTGAACAGCAGCTTAGGTTATTCGAACCGGATCCTTTTTCGTTTACATCGAATGGAGAAATAGAGTCATGTGAGAAGAATTTGCTCGATACCTTGGCACGGATCGCTCAAAGGAAGAAAGATGTGTTGAATAGTCATTTATCTCCGTATGATCCACCGAATGGTATTCAGTTATATTTGGATTCACAAGATGGAATAGCATCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCGGAAAACGGGCAGAACCAGAATCAAATTTGTGTGGCGGCTGAGTCGTCTTCGATTCCTCAAAGTGGTCAATATCCTGGTACAGTTTATGATCAAGTAACGCAGGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGCGACATGGGCAACCCGAACGACGATGGATACTCGCCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCGTTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACGATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGGGGATTGA 1023 44.77 MGRVKLQIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGQNQNQICVAAESSSIPQSGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNGD 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4500218 4502179 + Carg05791-RA Car16g00706 163858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00706 340 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car16g00706 340 Coils Coil 115 135 - -
Car16g00706 340 MobiDBLite consensus disorder prediction 311 340 - -
Car16g00706 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car16g00706 340 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00706 - - - csv:101222576 556.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00732 Car-Chr1:4469957 Car16g00706 Car-Chr16:4500218 3.28E-23 dispersed
Car13g00970 Car-Chr13:9716248 Car16g00706 Car-Chr16:4500218 6.63E-24 dispersed
Car16g00706 Car-Chr16:4500218 Car13g00658 Car-Chr13:8107063 1.25E-23 dispersed
Car16g00706 Car-Chr16:4500218 Car18g01052 Car-Chr18:10779401 9.71E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4959 PF00319 SRF-TF 4.00E-24 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00706 Car_Chr16 FPKM 0.0 0.0 0.245781 0.0 1.023106 1.782458 0.888816 0.0 0.0 0.113753