Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00706 ATGGGGCGAGTGAAGCTACAGATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTTTGCGATATCGATATCGCACTCATCATGTTCTCTCCTTCCAGCCGCCTCAGCCATTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAGAATAAAGAGTTTTTACTTGGAACACTGAATAATCTGAAGACAGAGAACGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAATTCAAATGTGGAGGAGCTTCAACAAGAGGTTGCTACGTTGAGACATGAGCTACAACTTGCTGAACAGCAGCTTAGGTTATTCGAACCGGATCCTTTTTCGTTTACATCGAATGGAGAAATAGAGTCATGTGAGAAGAATTTGCTCGATACCTTGGCACGGATCGCTCAAAGGAAGAAAGATGTGTTGAATAGTCATTTATCTCCGTATGATCCACCGAATGGTATTCAGTTATATTTGGATTCACAAGATGGAATAGCATCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCGGAAAACGGGCAGAACCAGAATCAAATTTGTGTGGCGGCTGAGTCGTCTTCGATTCCTCAAAGTGGTCAATATCCTGGTACAGTTTATGATCAAGTAACGCAGGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGCGACATGGGCAACCCGAACGACGATGGATACTCGCCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCGTTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACGATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGGGGATTGA 1023 44.77 MGRVKLQIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGQNQNQICVAAESSSIPQSGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNGD 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4500218 4502179 + Carg05791-RA Car16g00706 163858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00706 340 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car16g00706 340 Coils Coil 115 135 - -
Car16g00706 340 MobiDBLite consensus disorder prediction 311 340 - -
Car16g00706 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car16g00706 340 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00732 Car-Chr1:4469957 Car16g00706 Car-Chr16:4500218 3.28E-23 dispersed
Car13g00970 Car-Chr13:9716248 Car16g00706 Car-Chr16:4500218 6.63E-24 dispersed
Car16g00706 Car-Chr16:4500218 Car13g00658 Car-Chr13:8107063 1.25E-23 dispersed
Car16g00706 Car-Chr16:4500218 Car18g01052 Car-Chr18:10779401 9.71E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4959 PF00319 SRF-TF 4.00E-24 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00706 - - csv:101222576 556.984