Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00716 ATGATGGTGGAATTCCATGGAGAAATCCGAAGCTCCGGCGATGGAGACGAGCAAGACAAGGAAGAGGAACTTAGCTACGATGATCTCAAGAAACGGATGTGGAAAGATAGACAGAGGATGAAGCAGCTGAAGGAGAAGCGGGATACTGAAGAACCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGGAAAAAAATGGCCAGAGCTCAAGATTCGATCCTTAAGTACATGGATAAGATAATGGACGCTTGCAAGGCAAAAGGGTTTGTTTATGGGATCGTTCCGGAGAAGGGGAAACCAGTCACCGGCTCCTCGGAGAGCCTCCGGGAGTGGTGGCGGGACGACGTCCGGTTCGAACAAGATGCTCCCTTAGCCATAGCTCAATTCCTCCCGAAAGTTCTCGAAGAAACAGGGCTCGATTCGGAGTCGTTTTTGCACATGCTTCATGATTTACAGGACACAACATTGGGGTCGATTCTCTCTGCTTTGATTCAACACTGTATTCCACCACAGAGGAAATTCCCACTTGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGGAATGAGCTTTGGTGGGGTGAACAGGGTGCTGCTGGTGGACATGGCGTTCCGCCGTATAAAAAGCCTCACGATCTCAAAAAGGCATGGAAAATTAGTGTCTTGGCAGCAGTGATCAAACATATGTCCCCTGATTTGGACAATATGAGGAAATTGGTTCGACAATCGAAGAATTTACAAGCGAAAATGACGGCGAAGGAGACGCTTACTTGGGCTAAAGTCGTGAATCAAGAAGAATCCCTCTTGCAGCTAACAAAAAAAAGCCTCAAAATCACATCCGTCGAAGACGGACATGACGAAAACAGAGAAGAACAGGACGCCGGTGGGATTATTACGAAACGTAAGTGTATATTCGAACAAGTAGCTGCAGTGGCAGCCGATTCGGCGCTGTACGCTTGTCAGAACCGACGTTGCCCACAGAGCGAAGCGCCGATGGGATTCGCCGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGAAGCAGAGGATGAGAACATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCGGAGCCAAGCAGCGAGGAGGGGAGGAGCGAAGACGCCGTAGATGGGTCCGGCAGCAGCACGGTGGAGAATTACGGGAGCAGGTACTGGAAGGGCGGCGTGGGAGAGGCGGCGGTGGATGAGGCGTTTGAGATGCATAGAGTGAGTATGGATTTGAATGCTAGTCCGGCGGAGGATTTGGGTGGTGGGCAACAAGATGCGACTTCCGTTTGGGATTTGATATATGAATGGGCTGAAGACTAA 1365 51.21 MMVEFHGEIRSSGDGDEQDKEEELSYDDLKKRMWKDRQRMKQLKEKRDTEEPESAAREEASRRKKMARAQDSILKYMDKIMDACKAKGFVYGIVPEKGKPVTGSSESLREWWRDDVRFEQDAPLAIAQFLPKVLEETGLDSESFLHMLHDLQDTTLGSILSALIQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEESLLQLTKKSLKITSVEDGHDENREEQDAGGIITKRKCIFEQVAAVAADSALYACQNRRCPQSEAPMGFADKNARTEHETQCIYREAEDENIDTHLKSVVEWMNWELSRAEPSSEEGRSEDAVDGSGSSTVENYGSRYWKGGVGEAAVDEAFEMHRVSMDLNASPAEDLGGGQQDATSVWDLIYEWAED 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4581370 4582734 + Carg05802-RA Car16g00716 163868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00716 454 MobiDBLite consensus disorder prediction 1 64 - -
Car16g00716 454 Coils Coil 26 46 - -
Car16g00716 454 MobiDBLite consensus disorder prediction 24 64 - -
Car16g00716 454 Pfam Ethylene insensitive 3 27 266 IPR006957 GO:0005634
Car16g00716 454 MobiDBLite consensus disorder prediction 1 17 - -
Car16g00716 454 MobiDBLite consensus disorder prediction 375 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00714 Car-Chr11:4083376 Car16g00716 Car-Chr16:4581370 6.60E-97 dispersed
Car15g00509 Car-Chr15:2772226 Car16g00716 Car-Chr16:4581370 1.55E-108 dispersed
Car16g00716 Car-Chr16:4581370 Car04g00754 Car-Chr4:4366440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4960 PF04873 EIN3 2.40E-109 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00716 K14514 - csv:101210698 674.47