Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00716 ATGATGGTGGAATTCCATGGAGAAATCCGAAGCTCCGGCGATGGAGACGAGCAAGACAAGGAAGAGGAACTTAGCTACGATGATCTCAAGAAACGGATGTGGAAAGATAGACAGAGGATGAAGCAGCTGAAGGAGAAGCGGGATACTGAAGAACCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGGAAAAAAATGGCCAGAGCTCAAGATTCGATCCTTAAGTACATGGATAAGATAATGGACGCTTGCAAGGCAAAAGGGTTTGTTTATGGGATCGTTCCGGAGAAGGGGAAACCAGTCACCGGCTCCTCGGAGAGCCTCCGGGAGTGGTGGCGGGACGACGTCCGGTTCGAACAAGATGCTCCCTTAGCCATAGCTCAATTCCTCCCGAAAGTTCTCGAAGAAACAGGGCTCGATTCGGAGTCGTTTTTGCACATGCTTCATGATTTACAGGACACAACATTGGGGTCGATTCTCTCTGCTTTGATTCAACACTGTATTCCACCACAGAGGAAATTCCCACTTGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGGAATGAGCTTTGGTGGGGTGAACAGGGTGCTGCTGGTGGACATGGCGTTCCGCCGTATAAAAAGCCTCACGATCTCAAAAAGGCATGGAAAATTAGTGTCTTGGCAGCAGTGATCAAACATATGTCCCCTGATTTGGACAATATGAGGAAATTGGTTCGACAATCGAAGAATTTACAAGCGAAAATGACGGCGAAGGAGACGCTTACTTGGGCTAAAGTCGTGAATCAAGAAGAATCCCTCTTGCAGCTAACAAAAAAAAGCCTCAAAATCACATCCGTCGAAGACGGACATGACGAAAACAGAGAAGAACAGGACGCCGGTGGGATTATTACGAAACGTAAGTGTATATTCGAACAAGTAGCTGCAGTGGCAGCCGATTCGGCGCTGTACGCTTGTCAGAACCGACGTTGCCCACAGAGCGAAGCGCCGATGGGATTCGCCGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGAAGCAGAGGATGAGAACATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCGGAGCCAAGCAGCGAGGAGGGGAGGAGCGAAGACGCCGTAGATGGGTCCGGCAGCAGCACGGTGGAGAATTACGGGAGCAGGTACTGGAAGGGCGGCGTGGGAGAGGCGGCGGTGGATGAGGCGTTTGAGATGCATAGAGTGAGTATGGATTTGAATGCTAGTCCGGCGGAGGATTTGGGTGGTGGGCAACAAGATGCGACTTCCGTTTGGGATTTGATATATGAATGGGCTGAAGACTAA 1365 51.21 MMVEFHGEIRSSGDGDEQDKEEELSYDDLKKRMWKDRQRMKQLKEKRDTEEPESAAREEASRRKKMARAQDSILKYMDKIMDACKAKGFVYGIVPEKGKPVTGSSESLREWWRDDVRFEQDAPLAIAQFLPKVLEETGLDSESFLHMLHDLQDTTLGSILSALIQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEESLLQLTKKSLKITSVEDGHDENREEQDAGGIITKRKCIFEQVAAVAADSALYACQNRRCPQSEAPMGFADKNARTEHETQCIYREAEDENIDTHLKSVVEWMNWELSRAEPSSEEGRSEDAVDGSGSSTVENYGSRYWKGGVGEAAVDEAFEMHRVSMDLNASPAEDLGGGQQDATSVWDLIYEWAED 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4581370 4582734 + Carg05802-RA Car16g00716 163868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00716 454 MobiDBLite consensus disorder prediction 1 64 - -
Car16g00716 454 Coils Coil 26 46 - -
Car16g00716 454 MobiDBLite consensus disorder prediction 24 64 - -
Car16g00716 454 Pfam Ethylene insensitive 3 27 266 IPR006957 GO:0005634
Car16g00716 454 MobiDBLite consensus disorder prediction 1 17 - -
Car16g00716 454 MobiDBLite consensus disorder prediction 375 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00716 K14514 EIN3; ethylene-insensitive protein 3 - csv:101210698 674.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00714 Car-Chr11:4083376 Car16g00716 Car-Chr16:4581370 6.60E-97 dispersed
Car15g00509 Car-Chr15:2772226 Car16g00716 Car-Chr16:4581370 1.55E-108 dispersed
Car16g00716 Car-Chr16:4581370 Car04g00754 Car-Chr4:4366440 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car10g00877 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 5.4e-190 661.4
Car15g00509 . 1 508 EIL Transcription Factor Family AT2G27050 59.7 6.8e-161 564.7
Car04g02399 . 17 533 EIL Transcription Factor Family AT2G27050 57.8 1.4e-158 557.0
Car11g00689 . 2 308 EIL Transcription Factor Family AT2G27050 83.5 1.7e-143 506.9
Car11g00714 . 66 366 EIL Transcription Factor Family AT2G27050 58.2 4.4e-91 332.8
Car11g00689 . 1 302 EIL Transcription Factor Family AT5G21120 54.5 2.9e-86 316.6
Car11g00714 . 73 327 EIL Transcription Factor Family AT5G21120 52.3 9.6e-74 275.0
Car11g00714 . 58 573 EIL Transcription Factor Family AT1G73730 53.5 8.0e-135 478.0
Car10g00877 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 7.3e-104 375.2
Car11g00689 . 36 301 EIL Transcription Factor Family AT1G73730 69.0 2.8e-103 373.2
Car04g02399 . 49 312 EIL Transcription Factor Family AT1G73730 67.7 4.9e-100 362.5
Car15g00509 . 40 335 EIL Transcription Factor Family AT1G73730 60.4 2.4e-99 360.1
Car16g00716 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 2.2e-76 283.9
Car04g00754 . 21 270 EIL Transcription Factor Family AT1G73730 54.9 2.7e-74 276.9
Car10g00877 . 3 619 EIL Transcription Factor Family AT3G20770 62.2 1.5e-206 716.5
Car04g02399 . 16 619 EIL Transcription Factor Family AT3G20770 51.2 1.1e-161 567.4
Car15g00509 . 7 512 EIL Transcription Factor Family AT3G20770 59.4 3.1e-159 559.3
Car11g00689 . 3 308 EIL Transcription Factor Family AT3G20770 84.8 7.6e-150 528.1
Car11g00714 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 7.3e-92 335.5
Car11g00689 . 44 296 EIL Transcription Factor Family AT5G65100 55.0 3.7e-79 293.1
Car11g00714 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 1.8e-70 264.2
Car16g00716 . 19 349 EIL Transcription Factor Family AT5G10120 59.4 1.1e-105 380.9
Car04g00754 . 18 355 EIL Transcription Factor Family AT5G10120 58.2 6.9e-103 371.7
Car11g00689 . 43 298 EIL Transcription Factor Family AT5G10120 58.5 7.9e-83 305.1
Car11g00714 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 4.8e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4960 PF04873 EIN3 2.40E-109 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00716 Car_Chr16 FPKM 13.193989 15.442932 14.317579 12.990691 13.958552 9.243939 13.381415 14.231279 11.601106 13.859409