Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00775 ATGGCGCCGCAGCCGCCGACGCCGCCGCCCACCAACTGGCTCTCCTTCTCTCTTTCCCCTATTGAAATGCTTCGCTCTACTGACTCTCCGTTTCTTCCTTATGAGCCACCCTCCACTGCCTCTCCGCACTATCTTTTGGACAGTTTTTACTCCAATAATGGATGGAGTGGCAGTGCTAATTCTCATCATAATCATGAACCTAAGCTTGAGGATTTCCTCGGTGATTCCTCGCCGATGATGCGATATTCCGACAGCCAAACAGAGACACAAGATTCGTCTTTGACTCATATTTACGACCATGCCTATTTTGGGGACCAACAGGATTTCAAAACCATTGCGGCGTTTCAAGCTTTTTCTGGTAACTCTGGCTCTGAAGTTGATGACTCTGTTTCCATTACCAGAACCCAGATCGCCGCTGCTGAGATCCCCACTGGTGCTCTGTCTCTTGCTGTCGTGCAGAGCTCCGACACGGCGTCGGCTGTTGTCGCTGTCGATTCTGATTCCTCCAAGAAAATCGCTGATACGTTTGGCCAACGAACTTCGATTTATAGAGGAGTCACTAGACATAGATGGACGGGGAGATATGAAGCGCATCTATGGGACAATAGCTGTAGAAGAGAGGGTCAAGCTAGGAAAGGACGACAAGGTTGGTTTGTGTTCTTTCAAAAAGATGTTTCGAATTACGCTAAAGAATTGGACGAGATGAAACATGTCACGAAGCAAGAGTTTATCGCTTCTTTGCGAAGAAAGAGCAGTGGTTTCTCGAGGGGTGCGTCGATTTATAGAGGTGTAACTAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGTCGTGTTGCTGGGAACAAGGATCTATATCTCGGGACGTTTGCTACGGAAGAGGAAGCAGCTGAGGCTTACGACATAGCAGCGATCAAGTTCAGAGGTTTGAATGCTGTGACGAACTTCGAGATGAGTCGTTATGACGTGGAAGCTATTGCAAAGAGCGCGTTGCCGATCGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTGGAAGCCGAGCAGAAACCGATTTTGAATCATGATCAAGCAATCCAGTGCAGCAATGGAACGAACAATATGAACTTAGGCACTGCCATCCCGTCCATCCCGTGCGGAATTCCATACGATACCGCATCTATGCTGTATCACCATAATTACTATCATCTTCAGCCTAACGCGATCGGTTCCTCAGAGTCGACCAGCTCAGCCATTGCAGCTCCGGCGACTTTGGGACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG 1302 49.23 MAPQPPTPPPTNWLSFSLSPIEMLRSTDSPFLPYEPPSTASPHYLLDSFYSNNGWSGSANSHHNHEPKLEDFLGDSSPMMRYSDSQTETQDSSLTHIYDHAYFGDQQDFKTIAAFQAFSGNSGSEVDDSVSITRTQIAAAEIPTGALSLAVVQSSDTASAVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGWFVFFQKDVSNYAKELDEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLEAEQKPILNHDQAIQCSNGTNNMNLGTAIPSIPCGIPYDTASMLYHHNYYHLQPNAIGSSESTSSAIAAPATLGPQAAEFFVWPHQSY 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4945950 4949209 + Carg05861-RA Car16g00775 163927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00775 433 Pfam AP2 domain 260 310 IPR001471 GO:0003700|GO:0006355
Car16g00775 433 ProSiteProfiles AP2/ERF domain profile. 260 318 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00802 Car-Chr4:4641132 Car16g00775 Car-Chr16:4945950 0 dispersed
Car16g00775 Car-Chr16:4945950 Car11g00359 Car-Chr11:1969480 1.73E-93 dispersed
Car16g00775 Car-Chr16:4945950 Car20g00058 Car-Chr20:321250 1.51E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4966 PF00847 AP2 1.60E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00775 K09285 - csv:101217714 638.647