Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00778 ATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATCTGGGACCGTGGAAAAACCATTTGCTTGAAGAAAATCTTAAGTTTACCTCTCATAGCAATAACATACGGTTACAGAATGTAGCCAGTCCATCGTCTCTTTTATTTCAGCAGAAGAACACTTGGAGCAGTCATTTATTTAGCTTGAAATACCCACCTAGTTACGTTGTGCCTTCTAGATACAATGCATTCAGGTGCCATTCGTCATTGATGACAAACCAACCACTGGATCCCTCTGGGATGAAGGCTGCTATAGTGGCGTTGACAAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTTGTTAAGATGGTTCCTGCAGTTAGTATTATGATATTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACAAGAAGCCTACTCCATAGTGATAGTAACTGGAAGAAAAGCCAGACATATAAAGTCATGACCTTGTATCTTCAACCATTATTTCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACGGAGTCTAGCCAAGTTGTGAAGCAACGGGTGTTGAATTTTGTTAGGTCATTGTCCACTGTACTGGCCTTTGCGTATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGACTAGTGAATCCAGTGATGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTGTACTCTGCAGTATGGGTTGCTGCTCTCTCATTGTTCATGGAGCTGTTAGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTGTTGCTGACATTAGCTGGCCGCGAGATTTTCACCAACTTTCTCTCAAGTGTAATGATTCATGCAACCCGTCCTTTCGTTGTAAATGAGTGGATCCAAACGAGGATCGAGGGCTATGAAGTTTCTGGAACTGTTGAGAAACATGTCTTATACGAACACGTTAGGCATTACTTCCATTTCAATCAACTGCAGCATGTAGGGTGGTGGTCGCCAACGATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTTACCATGAATGTCGTGAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTAGCCATCAGCCATTTGGATGTCAGTAAAATCAATAATATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTTTTTTTGGAAAACGTGAATCCTGAAAATCAGGCCCTTTTGATTTTGATATCTTGCTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTGAAGGAAGCTATATTTTTGGATCTTCTTAGAGTCATTAGACATCACCGAGCTCGACTTGCGACACCAATCCGCACAGTGCAGAAGATGCATAGTGATTCTGACTTGGAAAGCGTTCCATTTTCTGATTCAATATTTGGTCATGGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAACCCCCCTACAAAATTTACGGAGATGATAGAAAGCAAAGCCATAGTAGGACATCACGCACAACAACTGGAGAACAAAACAGTAAGCCCATTGCACGGTCGTCGGGTGACAACAAGGCAGCTAAAGAGACAACACCATCTGAAAGAAAGACAGAAGTAAAGACTGGAGAAGGACGAGACTCCGATACAAAAATACATTCCAAAGTTCCGATGTCGACCTCTGAAGATAAACCAAGCAGTGAATCGAAACATAAATCATCATCAAGGTCTGTGTCGAGTACGAGTACGAATGGTATCGCTGATATGCCAACTTCTGATGCCAAAACAACTCCATCAGATGCTGATAATTCAATGCAAGATTCTGGCTCCTCCAAGAAATCCAAAAATAGCTCAGGGAGTAACAACAAGCAGAACTACAAGCCTATCCATTCTTCTGTTTCCTTTCAGGAAGATGTCAAGAAACCAGAAGGAACTACTTCACCAGCTTCACAGCCAAGGATAGAAGGTGATCAGACGACGAATCCATCAACAACAAAGACCGGTGGCGTAGAAGAGAATATAATCCTCGGTGTTGCTTTGGATGGCTCTAAGAGAACACTCCCTATCGAGGACGACACGCCATCTTCCCCTCAAACGACGTTGGGAGCAAAAGATTTAGCTGCTGCATCCCTGAATGGGAACGGGGCGAATGGAGCAACAACTCCCGACAAGGAAACGAAACGACAGTCTCCTCCTACCACATCTTCTATTGAATAA 2280 42.85 MVLVGSLQLSYHLGPWKNHLLEENLKFTSHSNNIRLQNVASPSSLLFQQKNTWSSHLFSLKYPPSYVVPSRYNAFRCHSSLMTNQPLDPSGMKAAIVALTRFCNVLGGCPPPVVKMVPAVSIMIFAVWGLGPFLRYTRSLLHSDSNWKKSQTYKVMTLYLQPLFLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTRIEGYEVSGTVEKHVLYEHVRHYFHFNQLQHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAIFLDLLRVIRHHRARLATPIRTVQKMHSDSDLESVPFSDSIFGHGGATLNRRMLMIEPPYKIYGDDRKQSHSRTSRTTTGEQNSKPIARSSGDNKAAKETTPSERKTEVKTGEGRDSDTKIHSKVPMSTSEDKPSSESKHKSSSRSVSSTSTNGIADMPTSDAKTTPSDADNSMQDSGSSKKSKNSSGSNNKQNYKPIHSSVSFQEDVKKPEGTTSPASQPRIEGDQTTNPSTTKTGGVEENIILGVALDGSKRTLPIEDDTPSSPQTTLGAKDLAAASLNGNGANGATTPDKETKRQSPPTTSSIE 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4963208 4971463 + Carg05864-RA Car16g00778 163930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00778 759 MobiDBLite consensus disorder prediction 513 693 - -
Car16g00778 759 MobiDBLite consensus disorder prediction 550 592 - -
Car16g00778 759 MobiDBLite consensus disorder prediction 527 549 - -
Car16g00778 759 MobiDBLite consensus disorder prediction 593 691 - -
Car16g00778 759 MobiDBLite consensus disorder prediction 710 726 - -
Car16g00778 759 MobiDBLite consensus disorder prediction 706 759 - -
Car16g00778 759 MobiDBLite consensus disorder prediction 734 759 - -
Car16g00778 759 Pfam Mechanosensitive ion channel 241 465 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00778 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101217250 1112.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00181 Car-Chr12:1119626 Car16g00778 Car-Chr16:4963208 0 dispersed
Car12g00782 Car-Chr12:7528971 Car16g00778 Car-Chr16:4963208 1.70E-11 dispersed
Car16g00778 Car-Chr16:4963208 Car05g00491 Car-Chr5:2839254 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00782 . 149 532 Mechanosensitive Ion Channel Family AT4G00290 69.3 2.0e-153 539.7
Car16g00778 . 24 748 Mechanosensitive Ion Channel Family AT5G10490 54.0 2.1e-193 672.9
Car05g00491 . 10 730 Mechanosensitive Ion Channel Family AT5G10490 53.1 3.2e-186 649.0
Car12g00181 . 61 667 Mechanosensitive Ion Channel Family AT5G10490 57.7 5.1e-184 641.7
Car05g00491 . 10 710 Mechanosensitive Ion Channel Family AT1G58200 55.3 1.5e-196 683.3
Car12g00181 . 10 632 Mechanosensitive Ion Channel Family AT1G58200 55.5 4.2e-178 622.1
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G53470 54.9 6.6e-200 694.9
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G78610 57.3 4.9e-216 748.4
Car20g00632 CCT 229 778 Mechanosensitive Ion Channel Family AT2G17000 58.6 2.5e-172 603.2
Car11g01388 CCT 270 862 Mechanosensitive Ion Channel Family AT2G17000 52.3 3.3e-172 602.8
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G19520 51.5 2.2e-79 294.3
Car10g00675 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 2.9e-201 699.1
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G12080 59.4 6.9e-94 342.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00778 Car_Chr16 FPKM 1.503311 1.385614 13.417091 12.57681 27.33194 24.174267 27.761099 12.278958 12.204886 11.849856