Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00792 ATGGATGAGAGATGCGAGAACGGCCGCGAAAGTGAGGGGTCTGAGAGCTTGGCGGAATCGCCGTTTATAGAGGATAGAGATTCTGTATCGCTCACGCTAGGGGAGCCGCTCTTGCGTGCCAGTACTGCGAGGATCAGTACTACCTCGCAACTTGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCTTGGACTACGAGATTATTGAGAATGATCTTTTCAAGCAGGATTGGAGGTCAAGAAGAAAGGTCGAGATATTTCAGTATGTCATCCTCAAATGGACGCTGTGCCTTTTCATTGGTCTAATTACCGGGGTCGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCACAAACTTCTGCTGACGAATAATCTGATGCTTAAGGAAAAGTACTATCAGGCCTTTGCAGTATACGTTGGATCCAATATCGTCTTAGCTGCTGCTGCTGCAACCCTCTGTGCCTATATTGCTCCGGCTGCTGCAGGTTCGGGTATTCCTGAGGTGAAAGCATACCTTAACGGTATTGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAGGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATAACTTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCTGTTGTCTTGAGGGGTTTCATGGAGTTTTGTCGAGGGGGAAAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCGAAATCCACACCGAAAACTCCGCTTATGGCACCCCAGATCTTATTGCAATTATTTTACTTGGAGTCATTGGAGGTGTGCTTGGAAGCCTTTACAACTACCTCGTCGATAAGGTTCTTCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGATCGAAGCTCATCCTTGTTGTTGGCGTTTCCATATTGACAACCTGTGTCTCCTTTGGTCTTCCTTGGTTCTCACAATGTTTACCTTGCCCATCTGACTTGGACGATCAATGCCCTACCGTTGGTCGCTCGGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCTTTATTTTTCAATACCAATGATGATGCCATCCGGAGCCTGCTCACATCTGCTAGTGACAAGCATTTTCAGTTGTCCTCACTTTTTATATTCTTTGGTGCTATCTATTGTCTAGGCATTATTACTTATGGCATTGCCGTGCCTTCAGGGCTCTTTATTCCTGTGATTCTGGCAGGGGCCTCTTATGGTCGCATTATAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGCCTCTATGCCCTTCTCGGTGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTTTGTGTCATACTCCTGGAGCTTACCAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTGATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCTTTAATTACGTTTTCTGGGATCGAAAAGGTCGATAACATTATCCACGCTTTGAAAACGACTAACCACAATGGGTTTCCTGTAATTGATGAACTGCCTTCCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATTTGCTTGTTTTGCTTAAAGAAAAAAAGTTCACTAAGAAAAAGGTGTCGATTAGATCAGAAATTTTGAGGCACTTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAACTTGAAGATTTGAACTTCAATGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCGTTACAAACACATCGCCCTACACAGTGGTTGAATCAATGTCCCTAGCTAAAGCGGCTATTCTCTTTCACGCACTCGGCTTGAGGCACTTGTTGGTCGTTCCGAAGACACCTGGGAGGCCTCCCATTGCTGGAATTCTTACACGGCACGACTTCATGCCGGAGCATATTTTGGGACTTTACCCACATCTCAACCCCCACAAGTAG 2331 45.26 MDERCENGRESEGSESLAESPFIEDRDSVSLTLGEPLLRASTARISTTSQLAIVGSNICPIESLDYEIIENDLFKQDWRSRRKVEIFQYVILKWTLCLFIGLITGVVGFFNNIAVENIAGHKLLLTNNLMLKEKYYQAFAVYVGSNIVLAAAAATLCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRGGKCGLFGEGGLIMFEIHTENSAYGTPDLIAIILLGVIGGVLGSLYNYLVDKVLRTYSIINERGPGSKLILVVGVSILTTCVSFGLPWFSQCLPCPSDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRSLLTSASDKHFQLSSLFIFFGAIYCLGIITYGIAVPSGLFIPVILAGASYGRIIGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIIHALKTTNHNGFPVIDELPSSDSSELCGLVLRSHLLVLLKEKKFTKKKVSIRSEILRHFKAHDFAKAGSGKGVKLEDLNFNEEEMEMFVDLHPVTNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNPHK 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5197673 5203450 - Carg25375-RA Car16g00792 163944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00792 776 Pfam CBS domain 712 760 IPR000644 -
Car16g00792 776 Pfam Voltage gated chloride channel 150 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 SUPERFAMILY CBS-domain pair 587 761 IPR046342 -
Car16g00792 776 SUPERFAMILY Clc chloride channel 71 585 IPR014743 -
Car16g00792 776 CDD ClC_6_like 62 583 - -
Car16g00792 776 CDD CBS_pair_voltage-gated_CLC_euk_bac 586 763 - -
Car16g00792 776 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car16g00792 776 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car16g00792 776 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car16g00792 776 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car16g00792 776 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car16g00792 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 32 776 - -
Car16g00792 776 MobiDBLite consensus disorder prediction 1 21 - -
Car16g00792 776 Gene3D - 609 747 IPR046342 -
Car16g00792 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 32 776 - -
Car16g00792 776 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00792 776 Gene3D Clc chloride channel 85 584 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00792 Car-Chr16:5197673 Car17g00223 Car-Chr17:1376376 1.20E-18 dispersed
Car04g02848 Car-Chr4:21611107 Car16g00792 Car-Chr16:5197673 3.12E-144 transposed
Car12g01158 Car-Chr12:11153212 Car16g00792 Car-Chr16:5197673 0 transposed
Car15g00084 Car-Chr15:497110 Car16g00792 Car-Chr16:5197673 0 transposed
Car17g00224 Car-Chr17:1381171 Car16g00792 Car-Chr16:5197673 5.23E-69 transposed
Car16g00792 Car-Chr16:5197673 Car04g00826 Car-Chr4:4828587 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00792 K05016 - csv:101209987 1328.15