Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00797 ATGGCTCTGGTCCTGCATTCTTGGAAGGCTAACAAAAATGCTTACAAGGCTTTTATAGCTGCTGAATACAATGGTGTCAAAATTGACCTTTCTCCAGATTTTGTCATGGGCGTAACCAATAAAAGTCCTGAATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTGTTGGAAACACCCGACGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGATTACTTAGATCGGAAAGCAATGTGTTTGATTTTATTATCATACCGTTCATTCTATTGTTTTCAGGGACATGTTGAACAATGGATCGATTTCTCCACAACGGAAATAGATGCTCATATTTCAACAATTTTGAGGCCTAGATTTGGATATGGTGTTTACCATCCTGCTGTAGAAGAAGCTGCAAACGCTGCCCTAAAACGATCTTTTGCTGCTTTGAACTCTTACCTTGCTTCAAACACATTCCTTGTTGGTCATTCTGTGACACTGGCTGATATCATTTTGACATGCAATCTCTATTTGGGATTTACGTATATATTGACTAAAAGCTTTACTTCCGAGTTCCCTCACGTCGAGAGGTACTTCTGGACGTTGGTCAATCAACCAAATTTCCAAAAGATAATTGGTGAGGTAAAGCAGACTGATGCCATTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCACCTGCTGCAGAAGAGGAGGCACCAAAGCCGAAGGCCAAAAATCCTCTCGACCTGCTTCCTCCCAGTAAGATGATTTTGGACGAGTGGAAACGTCTCTACTCGAACACTAAAACCAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGAAGGATACTCCCTTTGGTTCTGTGATTACAAATACAACGACGAGAACACAGTTTCATTCGTGACTTTGAACAAAGTCAGCGGATTTCTTCAGAGAATGGATCTTGCTCGCAAGTATGCCTTCGGAAAGATGCTCGTGATCGGATCAGAGGCTCCATTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGACAAGAAATCCCGCAATTTGTGATCGATGAATGCTATGATATGGAACTATACGAGTGGAAGAAGGTGGATATCTCGGACGAAGCCCAGAAGGAGAGGGTGAACCAAATGATTGAAGACCAGGAACCATTCGAGGGTGAAGCTCTTTTGGATGCTAAATGCTTCAAGTGA 1254 43.46 MALVLHSWKANKNAYKAFIAAEYNGVKIDLSPDFVMGVTNKSPEYLKMNPIGKVPVLETPDGAIFESNAIARYDYLDRKAMCLILLSYRSFYCFQGHVEQWIDFSTTEIDAHISTILRPRFGYGVYHPAVEEAANAALKRSFAALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYILTKSFTSEFPHVERYFWTLVNQPNFQKIIGEVKQTDAIPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAAEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5228476 5231316 + Carg25381-RA Car16g00797 163949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00797 417 Pfam Glutathione S-transferase, N-terminal domain 5 73 IPR004045 -
Car16g00797 417 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 257 417 IPR001662 GO:0003746|GO:0006414
Car16g00797 417 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Car16g00797 417 MobiDBLite consensus disorder prediction 221 260 - -
Car16g00797 417 Pfam Glutathione S-transferase, C-terminal domain 130 201 IPR004046 -
Car16g00797 417 Pfam Elongation factor 1 gamma, conserved domain 256 364 IPR001662 GO:0003746|GO:0006414
Car16g00797 417 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 219 IPR010987 -
Car16g00797 417 MobiDBLite consensus disorder prediction 227 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00742 Car-Chr6:5037073 Car16g00797 Car-Chr16:5228476 0 dispersed
Car16g00797 Car-Chr16:5228476 Car12g00363 Car-Chr12:2329870 3.58E-08 dispersed
Car16g00797 Car-Chr16:5228476 Car04g00833 Car-Chr4:4864965 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00797 K03233 - csv:101215571 664.455