Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00820 ATGTGGTTTGATCTCACCTTAGAAGGGAGGTCCAACAATCAGAACATTGATGATAAATGGTTCTTTACACACCATCCGGTCCACCAAAGTTCCTCCCATGACCTGAAATTAGCATTTTCTCAGCTCTTCGAGGAAAGGACTTTAAATTTTGAAATATCTGTGTCTTCTTCTCTGAACCTTCCCAATTCTGTCTCAAGATCAAGAGGGGATTTTGAGGACAAGAAGTGCAAAGGCAGCTGTCAAGGTTTTGCAATGGACAAGCATATTGTAAGTGAGAAGCTGAGTTCAGGATCAGCCACTAAATTGAGCTATACAGACTCAAAAGGAACTTCGAGTTCAAATCTGAGTTTGGTTTCTGATGCAAGCTGTTTAACCGAAAACTCCAGGCCAGATGTTTCGGTTACTGGTTCGAGTTCAGAGGGAAAGGAGCCAGCTGACAGCCTAACTAGCAGCACTATCATAAATGGTTTGGGTCGTCAACAACAATGTAAGGCAACGGAGGTAACAAGCCAACCATTGAGCATGTCTAGTAGACTTTTGTCTGATATGAGGAGGAGTCTCAGGAAAAGCTGTGCCAATAGACAAGTATCGAGATTGGAGGTTAATAACTGTCAAAGACAATCAAGTGGCCATAACTCTTCTTCGAGTAATTCAAGCATCACCAATACATCAGAACAACACCTGAAAAGTAGTGTAGGTGTTGGAAACTTTTCCAGGATGACTCAAACAACAATGAACAAATCCAAAGATTCAAGTGTTTTCTCGAGCACATTAAAGATTCAAGTGAAGGGCGCGAGTTCCAACTCAAGAAGAGTTAGTAAATCCTATGCTAAGCCCACTAAGCTCGCCCACCTCGAGTCTTCAAAACCAAAGATACTTGGTCCAAAAGCTTCTCTACTACAGCAAAGAAACCTTCAAAACACTTGTTTAAAGCCAAAGAAAAAGGAAAGTTTAGATGGAATAGGAAGATGCAAGACAGTAGTAGCTGGAAAGGAGAATGCAATAAGGAGAATTGCTGTGAGTCAGAAATGCAATGGTAGAGACCCTTATACATTTAGCATGGTCAAGGATCAGAAGAAGACAGAGCACAAGGTTCCACAAAGACTTGGTGGACGAAGTGGAGTCAGATCGAAGCAGCAGGCAAAAAATTGTCATCCAAGTGAAGGAAAAAGTCTGGAAAATGGAAGCAAAAGGGTATACTTCCGTTGA 1209 41.69 MWFDLTLEGRSNNQNIDDKWFFTHHPVHQSSSHDLKLAFSQLFEERTLNFEISVSSSLNLPNSVSRSRGDFEDKKCKGSCQGFAMDKHIVSEKLSSGSATKLSYTDSKGTSSSNLSLVSDASCLTENSRPDVSVTGSSSEGKEPADSLTSSTIINGLGRQQQCKATEVTSQPLSMSSRLLSDMRRSLRKSCANRQVSRLEVNNCQRQSSGHNSSSSNSSITNTSEQHLKSSVGVGNFSRMTQTTMNKSKDSSVFSSTLKIQVKGASSNSRRVSKSYAKPTKLAHLESSKPKILGPKASLLQQRNLQNTCLKPKKKESLDGIGRCKTVVAGKENAIRRIAVSQKCNGRDPYTFSMVKDQKKTEHKVPQRLGGRSGVRSKQQAKNCHPSEGKSLENGSKRVYFR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5397127 5399650 + Carg24076-RA Car16g00820 163972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00820 402 MobiDBLite consensus disorder prediction 190 230 - -
Car16g00820 402 MobiDBLite consensus disorder prediction 127 150 - -
Car16g00820 402 MobiDBLite consensus disorder prediction 357 402 - -
Car16g00820 402 MobiDBLite consensus disorder prediction 373 390 - -
Car16g00820 402 MobiDBLite consensus disorder prediction 186 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00820 - - - cmax:111483281 686.797
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00861 Car16g00820 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00820 Car-Chr16:5397127 Car04g00861 Car-Chr4:4971351 4.03E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g299 . . . . . . . . Cmo16g00864 . . . . . . . . . . . . . . . Cla10g00606 Cam10g0599 Cec10g0626 Cco10g0602 Clacu10g0628 . Cre10g0840 . . . Cone15ag1099 . Csa03g00594 . . . . . . . . . . . . . Cma04g00919 . Car04g00861 Car16g00820 Cpe14g00703 . . . . . . . . . . . . . . . . . Chy06g01729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009429 0 0 1 2 1 1 2 1 1 1 1 1 2 1 1 2 0 1 2 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00820 Car_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0