Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00821 ATGGCCACCTCCTCCGACGAAGAAGTAGAAAAGGAATTACAAGAACACGACGGTGGCTTCTGCCGGAGCCTCTACGGGGTCGGCTCGGTTCTCGACCCGAGAGCCAAATGGGTCCGAGAATGGAACCGGGTCTTCCTCCTCGTCTCCGCCGCAGGCCTCTTCGTGGACCCTCTCTTCCTCTACACGCTCTCCATAAGCGAGTCATGGATGTGCTTGTTTGTTGATGGGTGGTTAGCCATCACCGTCACCGTCCTCCGCTGCACCGCTGACGCCTTCCACCTTTGGAACATGTGGCTCCAGCTCAAGACTGCCACAAGATACTCCTTCGCCGGTGGAGCTGCCACCGCAGCCACGCCGGAGAATAGAGGCCTTAGAGATTCCACCCCACGCGCCGTCGCTCTCCGCTACTTCAAATCCAAAAAAGGCTTCTTCTTTGATCTCTTCGTTATTCTTCCACTCCCACAGGTGGTATTATGGGTAGTAATTCCAAGAATAATGAAGGAAGGATCAGTGACATTGGTGATGACAGTATTGTTAATTGTATTTCTATTTCAATACTTACCGAAATTGTACCATTCGGTTTGCCTGTTGCGGCGCCTCCAAAACCTGTCGGGGTTCATCTTTGGCACGGTCTGGTGGGGCATTGCCCTCAATCTCATCGCTTACTTTGTTGCGGCTCACGCTGCAGGTGCATGCTGGTACCTGTTGGGTGTGCAAAGAGCAGCCAAGTGCCTTAAAGAGCAATGCAGAGGCACGAGCAGCTGTGGGGTGAGGCTGTTGTCGTGCAAAGATCGTATCTTTTATGGAGCCACCAAGATGGGAATGGGGAGAGACAGTGCAAGATTTGATTGGGCGAGTAACAGGCAACCGAAATTCATGTGTTTGGATACTGCTGATAACTTTAATTATGGAGCTTATAAATGGACTGTTCAGCTTGTTGTCAACCAAAGCCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGTCTCATGACTCTTAGTACCTTTGGGAACTTGGAGAGCACCACGGAATGGCTGGAAGTTGTGTTCAATATCATTGTTCTCACCAGTGGACTCTTATTGGTCACCATGTTGATAGGAAACATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAACAAGGAATGCAGCTAAAGATGAGGAATCTAGAGTGGTGGATGAGAAAGCGACATCTTCCACAAGGCTTCCGACAGCGTGTTCGGAACTTCGAACGGCAACGTTGGGCAGCGATGCGCGGAGTTGACGAGTGCGAGATGATCAAAAACCTACCGGAAGGGCTCCGACGAGAGATAAAGTATCACCTTTGCTTGGATCTAGTTAGGCAGGTACCATTGTTTCAACACATGGATGATCTTGTTCTTGAGAACATTTGTGACCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACCATAACAAGAGAAGGCGACCCAGTTCAAAGAATGCTGTTTGTCGTGCGAGGGCATCTCCAAAGCAGCCAAGTCTTACGCGACGGCGTCAAAAGCTGCTGCATGTTGGGGCCAGGCAACTTCAGCGGCGACGAGCTTCTATCCTGGTGCCTCCGCCGCCCCTTCATAGAGCGGCTTCCGCCGTCCTCTTGCACTTTGGTTACACTTGAGACGACGGAGGCGTTTGGGTTGGAGGCGGAGGATGTCAAGTACGTAACCCAGCACTTTCGCTACACATTCGTCAACGACAAGGTCAAACGTAGCGCCCGCTACTACTCCCCTGGGTGGCGTACTTGGGCTGCCGTTGCCATCCAGCTCGCCTGGCGTCGTTATCGCCACCGGCTTACGTTAACATCGTTGTCGTTTATTCGGCCTCGGCGTCCCCTGTCGCGGTGCTCTTCCTTGGGGGAGGATCGCCTCCGCCTCTACACCGCGTTGCTTACTTCTCCCAAGCCCAATCAGGATCACTTCGATTTTTGA 1950 52.0 MATSSDEEVEKELQEHDGGFCRSLYGVGSVLDPRAKWVREWNRVFLLVSAAGLFVDPLFLYTLSISESWMCLFVDGWLAITVTVLRCTADAFHLWNMWLQLKTATRYSFAGGAATAATPENRGLRDSTPRAVALRYFKSKKGFFFDLFVILPLPQVVLWVVIPRIMKEGSVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGFIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCRGTSSCGVRLLSCKDRIFYGATKMGMGRDSARFDWASNRQPKFMCLDTADNFNYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLKMRNLEWWMRKRHLPQGFRQRVRNFERQRWAAMRGVDECEMIKNLPEGLRREIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEAEDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5402498 5406145 + Carg24077-RA Car16g00821 163973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00821 649 Pfam Ion transport protein 41 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car16g00821 649 SUPERFAMILY cAMP-binding domain-like 378 566 IPR018490 -
Car16g00821 649 Gene3D Helix hairpin bin 377 443 - -
Car16g00821 649 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 646 - -
Car16g00821 649 ProSiteProfiles cAMP/cGMP binding motif profile. 452 531 IPR000595 -
Car16g00821 649 Pfam Cyclic nucleotide-binding domain 473 560 IPR000595 -
Car16g00821 649 Gene3D Jelly Rolls 450 568 IPR014710 -
Car16g00821 649 CDD CAP_ED 452 558 IPR000595 -
Car16g00821 649 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 646 - -
Car16g00821 649 SUPERFAMILY Voltage-gated potassium channels 33 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02689 Car-Chr4:20863967 Car16g00821 Car-Chr16:5402498 0 dispersed
Car16g00821 Car-Chr16:5402498 Car02g00892 Car-Chr2:6324982 1.21E-125 dispersed
Car16g00821 Car-Chr16:5402498 Car02g00648 Car-Chr2:4882037 3.77E-127 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00821 K05391 - csv:101207531 1188.33