Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00829 ATGGCAACAGTTTGGGTGTCCTTGAAGAAATCTTTGTACTGCAAATCAGACCCATCAGAAGTCCATGACCCAAAAACCAGGAAGAATTTGGGTTCAATTTTGACCAGAAAAACAGGGGGAGGAGGCAGATCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGACGTCATCCATGGCGGCACCAGCAAGAGGCATTTCGACAAGCCCCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGCGACTTTCTCAACCCAATAACCCACCAAGTCATTCTCAACAACTCTAGATGCGAGCTCAAAATCACCGGTTTCCATACCGGTTTCCACCAAGATGTACCTGCCGCCGATCCTCACGCCGGTGCTAACACCGCTTCCACCTTCGTCGGCACTCTGACACCAGGCACACCCGGCCCCGGTGGCTACCCATTGAGGCCTTCTTCGAGAAAGTTCCCATTAAGAGACGGATTCGGAAGCTCTCATAAATCTGGCGGCGGCGCTGGCGGCGGCGGAGTGAGGAACAGAGTCTCTTTGAAAACAGAGGATATTGGGAATGGGTTTTGTTCGACGGTTACTTGCCATAAATGTGGCGAGAAGTTCAACAAATGGGATTCTGCTGAAGCACATCATCTTTCAAATCATGCTGTAACAGAGCTTGTGGAAGGAGATTCATCAAGGAAAATCGTGGAGATAATATGCAGAACAAGCTGGTTAAAATCAGAGAATCAAAGTGGTAGAATAGAAAGAGTGGTGAAAGTTCACAATATGCAACGAACACTAGCCCGATTCGAGGAGTATCGTGAGACAGTCAAAATGAAAGCCAGCAAGCTCCCAAAGAAGCACCCACGGTGCATTGCAGACGGGAACGAGCTGCTGCGATTCTACGGCACGACGGTCGCGTGCTCACTTGGCCTCAATGGCTCCTCCAGCCTCTGCATATCGGAGAAATGCTGCGTGTGCAGAATCATACGCAATGGGTTCTCAGCAAAGACAGAGATGAAAGAAGGGATAGGCGTGTTCACAACTTCTACGAGTGCAAGAGCATTCAGCTCGATCGAGATGTCGGGACGGGACGAGGCGATAACGAGGAAGGCGATGATTGTATGCAGGGTGATTGCAGGGAGAGTTCATAGGCCATTGGAGAACATACAGGAAATGGCTGGACAGACGGGGTTTGATTCATTGGCGGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGTTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAAGCATGA 1278 48.9 MATVWVSLKKSLYCKSDPSEVHDPKTRKNLGSILTRKTGGGGRSGCSRSIANLKDVIHGGTSKRHFDKPPSCSPRSIGSSDFLNPITHQVILNNSRCELKITGFHTGFHQDVPAADPHAGANTASTFVGTLTPGTPGPGGYPLRPSSRKFPLRDGFGSSHKSGGGAGGGGVRNRVSLKTEDIGNGFCSTVTCHKCGEKFNKWDSAEAHHLSNHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVVKVHNMQRTLARFEEYRETVKMKASKLPKKHPRCIADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFSSIEMSGRDEAITRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKA 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5472356 5473704 + Carg24085-RA Car16g00829 163981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00829 425 ProSitePatterns Zinc finger C2H2 type domain signature. 192 213 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00458 Car-Chr3:4984175 Car16g00829 Car-Chr16:5472356 3.26E-18 dispersed
Car09g00835 Car-Chr9:5096028 Car16g00829 Car-Chr16:5472356 1.42E-174 dispersed
Car15g00647 Car-Chr15:3571696 Car16g00829 Car-Chr16:5472356 2.70E-76 dispersed
Car16g00569 Car-Chr16:3597167 Car16g00829 Car-Chr16:5472356 1.58E-169 dispersed
Car16g00829 Car-Chr16:5472356 Car20g00310 Car-Chr20:1797606 2.58E-52 dispersed
Car16g00829 Car-Chr16:5472356 Car04g00864 Car-Chr4:4978981 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4971 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00829 - - csv:101208986 681.019