Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00853 ATGTGGAGGGACGCTGGAGCTCCTGCTGATTCTTTCTATGAGGTTCGCCCTGAGTGCACCGATGTTCCCAAAACCCGCTTCAAGATCAGGGCTGGGAAGACCTTGAGTGTTAGAAAATGGCAAGGAGCATTCAATCCCGAAGGCCAACTGGACATTGCGAAGACTCTAAATCGCATTCATCGTGGGGGGATCCATCCTTCAATCAGAGGAGAAGTGTGGGAGTTTCTTCTTGGTTGTTATGATCCAACCAGCACCTATGAGGAAAGAGAAGAGATTCGCCAGCGTCGAAGGATACAGTATGCTACGTTTAAGGAAGACTGTCGACAGATGTTTCCTGTCGTTGGAAGTGGTAGATACATCACAGCTCCTGTAATCACAGAGGATGGTACGCCTATTCATGATCCGCTTGTACTTTTGGAAACAAATCCAGGGAGTGGTCCGCTTATACCCCAAGATACTGCCGTTGCTGTTGCGGATGCTGTTTCCGATGCTGTTTCCGATGCGGTTTCCGATGCTGTTTCTGATGCTGTTACTGATGCTGATACTGTTGCCAATCCTGATGCTGATGCTGTTGCCAATCCTGATGCTGTTGCCACTGCTGATGCTAATGCCGATGCTATTGCCGATGCTGTTGCTGCTGTTGCCGATGCTGTTGCTGCTGTTGCCGATGCCGATGCCGATGCCGATGCCGATGCTGTTGCCGATGCTGATACTGATGCTGAAGCTGATGCTGATGCTGGTGCGGATGCTGTTGCTGATGCCGATGATGATGCCGTTGCAGATGCGGATGCGGATGCTGTTGCTGTTGCCGATGCCGATGCTGTTGCCGATACTGATGTTGTTGCTGTTACTGATGCTGTTGCCGATGCTGTTGCTGTTGCCAATGCCGATGCTGTTGCTGATGCTGATGCCGATGCCGATGCCAATGCGGATGCCGATGCCGATGCCAATGCCAATGCCAATGCGGATGCCGATGCCGATGTCAATGCTGATGCCGATGCCAATGCCAATGCTGATGCGGATCCGAATGTTCCACAATCAAAGTCACAATCAAATTCCTCTAACAGTATGGCACCTGTGACTGATCCAAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGGTCTTGATGTGGTTCGGACTGACAGAACATTGGTGTTCTATGAAAAGCAAGAAAACTTGTCGAAACTTTGGGATATTCTTGCTGTTTATGCTTGGATCGATAAAGACGTTGGCTACTGTCAAGGAATGAGTGATCTTTGTTCCCCCATGATAATGCTTCTCGAGGATGAAGGCGATGCGTTTTGGTGCTTTGAACGTTTGATGCGCAGATTGCGAGGGAACTTTCGATGCACGGATAGCTCTGTCGGTGTGGAGACTCAACTCAGTAATCTGGCTGCTATCACGCAAGTGATTGATCCAAAGCTCCATCAACACTTGGAGACACTTGGTGGTGGCGATTATCTTTTCGCTTTCAGGATGCTTATGGTTTTGTTTCGTCGAGAGTTTTCGTTTTGCGATTCTTTGTATCTCTGGGAGATGATGTGGGCACTGGAATATGATCCTGATCAGTTCACAGTGTATGAAGAACCTGATGTGTGCAGTGATAAAGGCGATGGGTCGAAAGGAAAAGCAAAAGCGATACGTCAATGCGGGAAATACGAGAGGGAGAACTTGAAAGCAAAGAACTCACAAGCTCCTCTTCCAATCTCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGATAAGAGCACAAAGCTGCTTACAGAAGCTCGGGGTCTCGACGATGTTGTGAAGATATTGAACGACATGACTGGAAATCTGGATGCCAAGAAAGCATGCACTGGAGCAATGAAGCTTCACAAGAAATATCTAAAAAAGGCCAAGAAGCCATAG 1896 47.89 MWRDAGAPADSFYEVRPECTDVPKTRFKIRAGKTLSVRKWQGAFNPEGQLDIAKTLNRIHRGGIHPSIRGEVWEFLLGCYDPTSTYEEREEIRQRRRIQYATFKEDCRQMFPVVGSGRYITAPVITEDGTPIHDPLVLLETNPGSGPLIPQDTAVAVADAVSDAVSDAVSDAVSDAVTDADTVANPDADAVANPDAVATADANADAIADAVAAVADAVAAVADADADADADAVADADTDAEADADAGADAVADADDDAVADADADAVAVADADAVADTDVVAVTDAVADAVAVANADAVADADADADANADADADANANANADADADVNADADANANADADPNVPQSKSQSNSSNSMAPVTDPKIIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIMLLEDEGDAFWCFERLMRRLRGNFRCTDSSVGVETQLSNLAAITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDQFTVYEEPDVCSDKGDGSKGKAKAIRQCGKYERENLKAKNSQAPLPISVFLVASVLKDKSTKLLTEARGLDDVVKILNDMTGNLDAKKACTGAMKLHKKYLKKAKKP 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6232379 6235659 + Carg24819-RA Car16g00853 164005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00853 631 Gene3D - 456 630 - -
Car16g00853 631 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 339 630 - -
Car16g00853 631 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 128 - -
Car16g00853 631 ProSiteProfiles TBC/rab GAP domain profile. 63 520 IPR000195 -
Car16g00853 631 MobiDBLite consensus disorder prediction 334 358 - -
Car16g00853 631 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 348 450 - -
Car16g00853 631 MobiDBLite consensus disorder prediction 340 358 - -
Car16g00853 631 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 47 480 IPR035969 -
Car16g00853 631 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 458 624 IPR035969 -
Car16g00853 631 SMART tbc_4 328 543 IPR000195 -
Car16g00853 631 PANTHER - 339 630 - -
Car16g00853 631 PANTHER - 1 128 - -
Car16g00853 631 Pfam Rab-GTPase-TBC domain 347 518 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00853 - - - cmax:111483266 557.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00945 Car-Chr2:6666459 Car16g00853 Car-Chr16:6232379 1.02E-09 dispersed
Car06g01443 Car-Chr6:10272670 Car16g00853 Car-Chr16:6232379 3.01E-11 dispersed
Car08g00222 Car-Chr8:1394007 Car16g00853 Car-Chr16:6232379 1.07E-43 dispersed
Car15g00941 Car-Chr15:6713355 Car16g00853 Car-Chr16:6232379 1.31E-09 dispersed
Car16g00024 Car-Chr16:235149 Car16g00853 Car-Chr16:6232379 5.97E-10 dispersed
Car16g00853 Car-Chr16:6232379 Car18g01251 Car-Chr18:11890309 2.69E-14 dispersed
Car16g00853 Car-Chr16:6232379 Car04g00883 Car-Chr4:5079124 1.44E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00853 Car_Chr16 FPKM 10.661438 12.923398 2.091569 2.183326 0.0 0.0 0.261946 27.068153 28.288851 27.051281