Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00858 ATGGTATCCCCTGAAACCACCAATTGGCTCTTCGATTATGCGTTAATGGATGATATTCCTGTTGCCGATGCAAATTTCTCTGCCCCCACTGCCGGCTTCTCCTGGTCCATGCCAACGCTCAACGCCTCCTCCAATGTCAGCACGGAAATTGAAGGATCATTGTTCGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGAGGTGCAGATGAAGAATGCACCGTTCACCTTGATCTAAACTTCGACAAACACACCCAACTCAAATCTCTGAAGGTCAGAACTGAAACAAGTTGCGCATCTAGCTCAAAAGCATGTCGGGAGAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTGGAATTGGGAGCTATTTTGGAGCCCGGAAGACCACCTAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATTGTCGCTCAGTTACGTGGTGAAGCGAAGATGTTGAAAGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAAATGGAGAAAGAGAAGTTGGAGCAGCAACTAAAAGACATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTCCCACTTTTGCTGCTCAAGGCCAAGCAGCTGGAAACAAGTTGGTTCCTTTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCGGTCGACACCTCACAAGATCACGTACTCCGCCCTCCTGTTGCTTAA 777 47.75 MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPTLNASSNVSTEIEGSLFESDGLKEPGSKKRGADEECTVHLDLNFDKHTQLKSLKVRTETSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRIVAQLRGEAKMLKDSNTSLSEKIKELKAEKNELRDEKQRLKMEKEKLEQQLKDMNSQPGFLPPAIPPTFAAQGQAAGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 258
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 6308245 6312539 + Carg24824-RA Car16g00858 164010
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car16g00858 258 Coils Coil 147 202 - -
Car16g00858 258 Pfam Helix-loop-helix DNA-binding domain 103 150 IPR011598 GO:0046983
Car16g00858 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00125 Car-Chr2:743743 Car16g00858 Car-Chr16:6308245 4.38E-95 dispersed
Car03g00631 Car-Chr3:5736414 Car16g00858 Car-Chr16:6308245 6.78E-21 dispersed
Car09g00840 Car-Chr9:5125159 Car16g00858 Car-Chr16:6308245 5.64E-82 dispersed
Car13g00572 Car-Chr13:7589930 Car16g00858 Car-Chr16:6308245 3.04E-75 dispersed
Car16g00564 Car-Chr16:3571548 Car16g00858 Car-Chr16:6308245 3.66E-55 dispersed
Car16g00858 Car-Chr16:6308245 Car20g00518 Car-Chr20:2857941 1.77E-92 dispersed
Car06g01144 Car-Chr6:8488235 Car16g00858 Car-Chr16:6308245 1.06E-41 transposed
Car16g00858 Car-Chr16:6308245 Car04g00876 Car-Chr4:5055759 1.35E-126 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4974 PF00010 HLH 1.90E-09 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00858 - - zju:107431674 347.821