Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car16g00858 | ATGGTATCCCCTGAAACCACCAATTGGCTCTTCGATTATGCGTTAATGGATGATATTCCTGTTGCCGATGCAAATTTCTCTGCCCCCACTGCCGGCTTCTCCTGGTCCATGCCAACGCTCAACGCCTCCTCCAATGTCAGCACGGAAATTGAAGGATCATTGTTCGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGAGGTGCAGATGAAGAATGCACCGTTCACCTTGATCTAAACTTCGACAAACACACCCAACTCAAATCTCTGAAGGTCAGAACTGAAACAAGTTGCGCATCTAGCTCAAAAGCATGTCGGGAGAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTGGAATTGGGAGCTATTTTGGAGCCCGGAAGACCACCTAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATTGTCGCTCAGTTACGTGGTGAAGCGAAGATGTTGAAAGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAAATGGAGAAAGAGAAGTTGGAGCAGCAACTAAAAGACATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTCCCACTTTTGCTGCTCAAGGCCAAGCAGCTGGAAACAAGTTGGTTCCTTTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCGGTCGACACCTCACAAGATCACGTACTCCGCCCTCCTGTTGCTTAA | 777 | 47.75 | MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPTLNASSNVSTEIEGSLFESDGLKEPGSKKRGADEECTVHLDLNFDKHTQLKSLKVRTETSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRIVAQLRGEAKMLKDSNTSLSEKIKELKAEKNELRDEKQRLKMEKEKLEQQLKDMNSQPGFLPPAIPPTFAAQGQAAGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6308245 | 6312539 | + | Carg24824-RA | Car16g00858 | 164010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car16g00858 | 258 | Coils | Coil | 147 | 202 | - | - | |
Car16g00858 | 258 | Pfam | Helix-loop-helix DNA-binding domain | 103 | 150 | IPR011598 | GO:0046983 | |
Car16g00858 | 258 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 99 | 150 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car02g00125 | Car-Chr2:743743 | Car16g00858 | Car-Chr16:6308245 | 4.38E-95 | dispersed | |
Car03g00631 | Car-Chr3:5736414 | Car16g00858 | Car-Chr16:6308245 | 6.78E-21 | dispersed | |
Car09g00840 | Car-Chr9:5125159 | Car16g00858 | Car-Chr16:6308245 | 5.64E-82 | dispersed | |
Car13g00572 | Car-Chr13:7589930 | Car16g00858 | Car-Chr16:6308245 | 3.04E-75 | dispersed | |
Car16g00564 | Car-Chr16:3571548 | Car16g00858 | Car-Chr16:6308245 | 3.66E-55 | dispersed | |
Car16g00858 | Car-Chr16:6308245 | Car20g00518 | Car-Chr20:2857941 | 1.77E-92 | dispersed | |
Car06g01144 | Car-Chr6:8488235 | Car16g00858 | Car-Chr16:6308245 | 1.06E-41 | transposed | |
Car16g00858 | Car-Chr16:6308245 | Car04g00876 | Car-Chr4:5055759 | 1.35E-126 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4974 | PF00010 | HLH | 1.90E-09 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car16g00858 | - | - | zju:107431674 | 347.821 |