Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00869 ATGGCTCCTCACATCCAAATCGCATTTTTCTCCATTGCCCTTTTCGCTCTTCTTTCTAATTCCTCTTCTTCACCAACAAAAACCAGCGGCAACACCATCAACAAATGGTGCAATACGACGCCGCATCCTAAGGTTTGCATTTTCTTCATGTCACCCCTCAAATCTCCACCACAAAATCGACTCGAGTTTCGGAAAATGGCGATCAAAACCACATTGGAAGGAGCCGCCAAGGCTCAAAATTACGTGTCCCGATTCGGTCCCACCTGTAAAACCACTCGCCAGAGAGCCGCTTGGACCGATTGCTTCAACCTCTATAACGATACCGTTTTTCAATTAAACCGTACTATCCAATGTCTCGACGGTGGTAATCGCCTCCGGCATTGTACGGATTTCGATGCGCAAACTTGGCTCAGTTCTGCTCTCACTAACATCGATATGTGCAGCTCCGGCGCGGCTGATCTCAATGTCACGGATTTTATTACTCCCATCAAATGTCAGAATGTTTCCAAGATGATTAGCAATTGTTTGGCCATTAATGGGAGATTCTTACAGGAAGAGACCAAAAGCAGAACAATGGGAACAGAGGAATATCAAAATGGGTTTCCGACATGGGTTTCCAGTGGTGATCGGAAATTGTTGCAGTCGGCGAGGGTTAGAGCTCATTTGGTGGTGGCGAAAGATGGGTCTGGCAAATTCCGGACGGTTCAGGCGGCGATCAACGCCGCCGCGAGGAGGCGTGGGAGAAGCCGCTTTGTAATTTACATAAAGCGTGGGGTTTATAAAGAAAACATTGAAGTTGGGAACGATAATGCGAACATAATGCTGGTCGGAGATGGGATTAGATTTACCGTGATTACGAGCGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAATTCTGCAACCGCAGGTATCCAAGGTCCAGGGTTCATGGCTCGAGGCATAAGGTTTGTGAACACAGCCGGACCAAGAATGGGGCAAGCAGTGGCACTACGGTCATCATCGGACCTATCGGTGTTCCATCGGTGCAGCTTCGAGGGCTACCAAGACACACTCATGGTGCTGTCACAGAGACAATTCTACAAGCAATGCTACGTATACGGTACAATCGACTTCATTTTTGGGAACGCGGCAGTGGTTCTACAAAACTGCTTGATTTACGTGCGAAGGCCTTTAAAGGGGCAAGTGAACGTGATCACCGCGCAGGGCCGAGAGGACCCATTTCAAAACAGCGGAATCTCGATCCACAACTCGCAAATACGGGCGGCGGCTGATTTGCAGCCCATGATTGGGTCTGTGAAGACGTACTTGGGGCGGCCCTGGAAGAAGTACTCGCGGACCGTCATCATGAGAAGCTATATTGATAGCTTGGTGAGCCCAATGGGTTGGTTGGCGTGGCAAGGTACTAGATTTGCTCAAGATACGTTGTATTATGGGGAGTATCGTAATTTTGGGCCCAGAGCCTCCACCCGGCTTCGAGTCAGATGGCCTGGTTTTCATGCCATTACAACCCGAAATGTGGCCTCTAAGTTCACCGTCCGGAGACTCATCGCCGGCCATACTTGGCTTCCGGCCACTGGAGTTCCCTTCAAGCTTGACCTCTGA 1605 49.97 MAPHIQIAFFSIALFALLSNSSSSPTKTSGNTINKWCNTTPHPKVCIFFMSPLKSPPQNRLEFRKMAIKTTLEGAAKAQNYVSRFGPTCKTTRQRAAWTDCFNLYNDTVFQLNRTIQCLDGGNRLRHCTDFDAQTWLSSALTNIDMCSSGAADLNVTDFITPIKCQNVSKMISNCLAINGRFLQEETKSRTMGTEEYQNGFPTWVSSGDRKLLQSARVRAHLVVAKDGSGKFRTVQAAINAAARRRGRSRFVIYIKRGVYKENIEVGNDNANIMLVGDGIRFTVITSGRSVAAGFTTFNSATAGIQGPGFMARGIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYVYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLQPMIGSVKTYLGRPWKKYSRTVIMRSYIDSLVSPMGWLAWQGTRFAQDTLYYGEYRNFGPRASTRLRVRWPGFHAITTRNVASKFTVRRLIAGHTWLPATGVPFKLDL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6512627 6514296 + Carg24835-RA Car16g00869 164021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00869 534 ProSitePatterns Pectinesterase signature 1. 247 266 IPR018040 -
Car16g00869 534 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Car16g00869 534 Pfam Pectinesterase 222 519 IPR000070 GO:0030599|GO:0042545
Car16g00869 534 Pfam Plant invertase/pectin methylesterase inhibitor 32 178 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00734 Car-Chr2:5402566 Car16g00869 Car-Chr16:6512627 6.28E-50 dispersed
Car04g00310 Car-Chr4:1724972 Car16g00869 Car-Chr16:6512627 6.69E-38 dispersed
Car16g00869 Car-Chr16:6512627 Car15g00960 Car-Chr15:7028201 4.77E-133 dispersed
Car16g00869 Car-Chr16:6512627 Car14g01771 Car-Chr14:13895966 3.79E-175 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00869 K01051 - csv:101213944 832.787